Pairwise Alignments

Query, 318 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  182 bits (463), Expect = 7e-51
 Identities = 106/305 (34%), Positives = 161/305 (52%)

Query: 5   LVHRFYQALFVAWSVGTLTFILMRFIPGDVAYRIAAGRYGYDYVNADAALAVRAELGLDR 64
           ++ RF+    +   V  + F+L     GD A  I   R     ++  A  A+R  LGLDR
Sbjct: 5   IIQRFFILCLMLAIVSIIAFLLPYMTGGDPARTILFSRMHDTALDPHAVEALRVSLGLDR 64

Query: 65  SAFELYLQWLWDLLHLNLGHSLVSSEPVIHAIMHNLGHSLLLAGAATLLSLFIAIPIGVY 124
             +  Y  WLW+ L  +LG S  SS+PV + ++ +LG S+ LA  A  +++ +A+P+G  
Sbjct: 65  PLYVQYFTWLWNALRGDLGFSFTSSQPVANELLRSLGVSVTLALTALAVAVAVALPLGTL 124

Query: 125 CGKRTDRWADNLALLTSIMIKAQPVFLIGLGLVILFALQLNWLPVAGFGHPKFLILPALA 184
              R     DN A L      A P +       ++FAL L WLP AG+   + L+LPAL 
Sbjct: 125 AAMRPGGRLDNFATLMIQTFVATPEYWFAPMSALVFALYLGWLPSAGWDSWRSLVLPALT 184

Query: 185 LALGMAAMSSRMIRNATAQVLQSPYYAFARLKGLNHEQAFTRHAQRNIALPVMAFVGIQA 244
           L L   A  +++ R A A+VL++PY   AR +GL       RH  RN +LPV+ F  +  
Sbjct: 185 LTLRPLAYFTQVTRAAMAEVLRAPYITAARSRGLGMHGTVMRHGIRNGSLPVVTFFALWL 244

Query: 245 VSLVEGIVMIESLFSWPGVGHALSHAIFQRDIPMIQGSALVMGLLFVALNTLVDLVQYAL 304
             L+ G V++E +F+ PG+G  L  A+  RDIPM+QG  + +  L + +NTL D     +
Sbjct: 245 AGLLGGSVVVEVIFAIPGMGRLLYDAVINRDIPMLQGGFICIVALSILVNTLADSFYVLI 304

Query: 305 DPRLR 309
           +P +R
Sbjct: 305 NPAMR 309