Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score = 92.4 bits (228), Expect = 4e-23
 Identities = 133/542 (24%), Positives = 220/542 (40%), Gaps = 71/542 (13%)

Query: 16  RLFGLILALGGAGIWLTK-----TEPAPSSLEISGPFEFNSQDLAKDGFLFSRLQVVESL 70
           RL  + L LGGA     K     TE +P   +I       + D + +  +F+RL  V+  
Sbjct: 20  RLALVALLLGGATQLAAKPLVVCTEASPEGFDIVQYTTAVTADASAET-VFNRL--VDFK 76

Query: 71  VGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGS------QLTAQAAATALNHA 124
            G  E     P LA+ W +S DGL + F +R  V+FH          L A     +LN  
Sbjct: 77  PGTTEIQ---PALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWSLNRQ 133

Query: 125 LG-------KPGV---------IKQVPIKAITAQNDQVVIELNTVYRPLAAVLAHYSLAI 168
           L        K  V          K++ +K+++  ++  V+   T+ RP A  L   ++  
Sbjct: 134 LDPNHPWHDKTSVGYPYFESMGFKEL-LKSVSKADEHTVVI--TLSRPEAPFLRDMAMGF 190

Query: 169 ASPSSYD------ASGNVIRL----LGTGPYQIAQLQAPHKASVIRFNA----YWGKPAS 214
            S  S +       SG    L    +GTGP+     Q  +K + +RF      + GKP +
Sbjct: 191 TSIYSAEYGDQLLKSGKTAELNSKPIGTGPFIF---QRYNKDAQVRFKPNPDYFRGKPPA 247

Query: 215 IETINYLAGHRSESRALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLN 274
            + + +     S  R    +  +  +     P  +PS++Q   L +       T  I +N
Sbjct: 248 -DALVFAIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAMN 306

Query: 275 NEHPLLNHADVRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLA 334
            +H  LN   VR+AI++A +R+     +     +       P     +      P R L 
Sbjct: 307 TQHKYLNDVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTHNQNPPRDLD 366

Query: 335 TAQTLLANQGWTLNDQ-GLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDI 393
            A+ LL+  G        L  R G             P   L A  LQA LK+IG+++DI
Sbjct: 367 KARALLSQAGVPEGTVITLFTRNGGG--------PTNPNPRLSAEMLQADLKQIGLKLDI 418

Query: 394 AIDNSSAIPAKHHDGTLEMALIARNF-GTIADP---LPLLLSDFATHQGSDWGPTNWSSP 449
            +   + +  +  +G  E  L++  + G   DP   L  LLS  A   G ++    W +P
Sbjct: 419 RVMEWAEMLRRAKNG--EADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYA--RWCNP 474

Query: 450 QFSQLLAELSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSFDPFE 509
           +F +L++      DN    +L  +A ++  DE P I + + +   ++   V G+  +P  
Sbjct: 475 KFQELISRAREVIDNDERARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINPLT 534

Query: 510 IN 511
            N
Sbjct: 535 NN 536