Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 512 a.a., predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  104 bits (259), Expect = 9e-27
 Identities = 104/457 (22%), Positives = 193/457 (42%), Gaps = 33/457 (7%)

Query: 68  ESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALNHALGK 127
           + L G+++  +   +LA+S+TVSDDG+ +  ++R  ++F DG+   A A    L+ A   
Sbjct: 60  QGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGTDFNAAAVKANLDRASDP 119

Query: 128 PGVIKQVPIKAITAQND-----QVVIELNTVYRPLAAVLAHYSLAIASPSSYDASGNVIR 182
              +K+  +    A+ +      V I L   +     +LAH + A+ SP++ +  G  I 
Sbjct: 120 ANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAHPATAMISPAALEKYGKEIG 179

Query: 183 L--LGTGPYQIAQLQAPHKASVIRFNAYW--GKPASIETINYLAGHRSESRALLAQTGQA 238
              +GTGPY++          V +F  YW  G P  +++I +     + +RA + QTG+A
Sbjct: 180 FYPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLP-KLDSITWRPVADNNTRAAMLQTGEA 238

Query: 239 DLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLNHADVRQAISLAINREGI 298
              + +       L+++ N++L          I +N      ++  VR+A++ AINR  +
Sbjct: 239 QFAFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVTQKPFDNPKVREALNYAINRPAL 298

Query: 299 AQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLATAQTLLANQGWTLNDQGLLEREGQ 358
            +       + A  +  P++ A+  + K  P   +  A+ LL   G+             
Sbjct: 299 VKVAFAGYATPATGVVPPSI-AYAQSYKPWPYDPV-KARELLKEAGYP-----------N 345

Query: 359 AFRVQLLTYADRPELPLIATALQAQLKEIGIQVDI-AIDNSSAIPAKHHDGTLE--MALI 415
            F   L +  +      +    Q QL ++GI+  + A+D           G  E  + + 
Sbjct: 346 GFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMF 405

Query: 416 ARNFGTIADPLPLLLSDFATHQGSDWGPT-----NWSSPQFSQLLAELSTESDNARYQQL 470
              +          LS     Q  +W PT      +S+ Q    LA+    +D A   +L
Sbjct: 406 YTGWSASTGEADWALSPLFASQ--NWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTRL 463

Query: 471 AAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSFDP 507
              A  ++  E P IP+   + + + +K + GF   P
Sbjct: 464 YKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMP 500