Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score = 99.4 bits (246), Expect = 3e-25
 Identities = 109/456 (23%), Positives = 194/456 (42%), Gaps = 31/456 (6%)

Query: 59  FLFSRLQVVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAA 118
           F+F+ L   + LV ++EN +  P LAK W  S+DG      +R  V FHDG +  A AA 
Sbjct: 52  FVFASL--CDRLVDVDENLKAVPGLAKDWAWSEDGKTLTLNLREGVTFHDGEKFDAAAAK 109

Query: 119 TALNHALGKPGVIKQVPIKAITAQN----DQVVIELNTVYRPLAAVLAHYSLAIASPSSY 174
             L+ AL   G +++  I ++ +       Q+ + L T    L   L   + A+ +P + 
Sbjct: 110 YNLDRALTLKGSLRKSEISSVESVEVTGPMQIALHLKTPDAALLMQLTDRAGAMMAPEAA 169

Query: 175 DASGNVIRLLGTGPYQIAQLQAPHKASVIRFNAYWGKPA-SIETINYLAGHRSESRALLA 233
                    + +GPY+     +  +  + RF+ YW K A   + I YL    +  R    
Sbjct: 170 KKPDFAAHPVCSGPYKFDSRVSQDRIVLTRFDNYWNKDAYHFDKIIYLPIPDASVRLANL 229

Query: 234 QTGQADLVYTLDPISIPSLQQSHNLDL-YIESMP-RTVLIKLNNEHPLLN----HADVRQ 287
           + G  DL   +    + +++    L L  +  +  + +   +NN     N     A VR+
Sbjct: 230 RAGDLDLTEGIAASDVKTVEADSKLALAKVTGLGYQGITFNINNGKVPANDPFKDARVRE 289

Query: 288 AISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLATAQTLLANQGWTL 347
           A S AI+R+ + Q V +   + A+Q FSP +  +H+ +   P R +  A+ LL   G T 
Sbjct: 290 AFSQAIDRDALNQVVFEGLYTPANQAFSP-VSPYHV-NLPVPPRDVDKAKALLKAAGVT- 346

Query: 348 NDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNSSAIPAKHHD 407
                         V LL   + P    +   LQA + E G  +++ +   + +  +   
Sbjct: 347 ----------APLTVNLLV-PNNPTSQQVGQVLQAMVAEAGFNLNLQMTEFATLLDRQQS 395

Query: 408 GTLEMALIARNFGTIADPLPLLLSDFATHQGSDWGPTNWSSPQFSQLLAELSTESDNARY 467
           G  +++     +    DP   +   F   +G+      +S+ Q  + L +    +D    
Sbjct: 396 GDYQLSF--SGWSGRPDPDGSIYG-FINSKGT-LNDGRYSNAQVDEWLTQARQSTDQDAR 451

Query: 468 QQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGF 503
           Q L  +  + L  +MP+  + +  +I  +NK V GF
Sbjct: 452 QPLYDKVVKQLQTDMPIAYLYFEPRIFGLNKSVQGF 487