Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 524 a.a., nickel ABC transporter, nickel/metallophore periplasmic binding protein from Dickeya dadantii 3937

 Score =  114 bits (284), Expect = 1e-29
 Identities = 121/483 (25%), Positives = 202/483 (41%), Gaps = 29/483 (6%)

Query: 58  GFLFSRLQVVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAA 117
           G + ++  V ESLV +N      P LA+SWT+S DG  + F +R +V+F DG  LTA A 
Sbjct: 50  GEMAAQNMVFESLV-MNTPEGVKPWLAESWTISPDGKQYIFNLRHDVRFTDGEPLTADAV 108

Query: 118 ATALNHALGK------PGVIKQVPIKAITAQNDQVVIELNTVYRPLAAVLA-HYSLAIAS 170
              +   L          +++Q+  K       +V I L   Y P    L         S
Sbjct: 109 KQNIEAVLDNYPRHAWLELVQQID-KVTALDRYRVEITLKNPYYPTLIELGLTRPFRFVS 167

Query: 171 PSSY---DASGNVIRLLGTGPYQIAQLQAPHKASVIRFNAYWGKPASIETINYLAGHRSE 227
           P+++        +   +GTGP+ +A+ +    A  +    YWG    ++++ +      +
Sbjct: 168 PNAFIDGKTKNGITGYVGTGPWLLAEHKTNQYARFVVNPNYWGGRPRLDSVVWRVMPDRQ 227

Query: 228 SRALLAQTGQADLVY-----TLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLNH 282
           S  +  Q  Q  L++      LD  S  +LQ S      I     +  + LN+  P+   
Sbjct: 228 SMLMALQKEQVQLIFGADGDMLDMDSFAALQASGKYRTLISPPVASRALVLNSGRPITGD 287

Query: 283 ADVRQAISLAINREGIAQSVLKLPGSEAHQLFS---PALGAWHLADKTQPQRHLATAQTL 339
             VRQA+  AI++  IA  ++    S A  L S   P         +  PQ+    A  L
Sbjct: 288 KAVRQALQYAIDKAAIASGIMDNTESVADTLMSRHVPYCDIDLPVYRFNPQQ----AGAL 343

Query: 340 LANQGWTL-NDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNS 398
           L   GW L   + + E++G+A  + L    +      IA  +Q  LK+IG+Q+ I  +  
Sbjct: 344 LEAAGWHLAAGKTVREKQGKALTLMLSYNRNNAAEREIAELIQDDLKKIGVQLTILGEEK 403

Query: 399 SAIPAKHHDGTLEMALIARNFGTIADPLPLLLSDFATHQGSDWGPTNW--SSPQFSQLLA 456
            A   +   G  ++   + ++GT  DP    +S F     +D+         P+   L+ 
Sbjct: 404 QAFLDRQKSGDFDLQ-YSLSWGTPYDPAS-YISSFRIPAHADYQAQKGLRRKPEIDSLIG 461

Query: 457 ELSTESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVAGFSFDPFEINYRVAQ 516
           E+    +    Q+   +   LLADE   IP+TY +     +  + G SF+  +      +
Sbjct: 462 EILLTPNETPRQERYTRLFTLLADEAVYIPLTYSKTKAIYSPTLNGVSFNSSQYEIPFEK 521

Query: 517 MSF 519
           M F
Sbjct: 522 MHF 524