Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  102 bits (255), Expect = 3e-26
 Identities = 104/457 (22%), Positives = 184/457 (40%), Gaps = 57/457 (12%)

Query: 66  VVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALNHAL 125
           + E LV    + Q  P LA  W + D G  WRF +R  V+FHDGS  TA     +   A 
Sbjct: 54  IYEGLVRYGPDFQIEPALATEWKLID-GKAWRFTLRKGVKFHDGSDFTADDVVASFTRAS 112

Query: 126 GKPGVIK-QVPIKAITAQNDQVVIELNTVYRPLAAVLAHYSLAIASPSSYDASGN----- 179
                ++  +P+ A   + D   ++L  V  P +  L   +      + +    N     
Sbjct: 113 DATSPLRGNIPVFAGVKKVDDYTVDLE-VSAPTSLFLNDITNIFIFNAKWLKDNNSEKPT 171

Query: 180 ----------VIRLLGTGPYQIAQLQAPHKASVIRFNAYWG-KPASIETINYLAGHRSES 228
                      +   GTGP+++       K  ++    +W  K  +++ I ++    + +
Sbjct: 172 DFASKVDGYTTMHTNGTGPFKLESRVPDSKTVLVANEGWWDQKKHNLDRIEFVPIASAAT 231

Query: 229 RALLAQTGQADLVYTLDPISIPSLQQSHNLDLYIESMPRTVLIKLNNEHPL-------LN 281
           R     +G+ DL+ +     +P L+ S N+ +   +  RT+ I  N    L        N
Sbjct: 232 RVAALLSGEIDLIDSAPIQDLPRLESSPNISVKKRTELRTLFIGFNRREKLEDGKPNPFN 291

Query: 282 HADVRQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLATAQTLLA 341
              VRQA   +I+R+ I + V++     +  L +P +  +  +  T      A AQ LLA
Sbjct: 292 DLRVRQAFEASIDRDLINKKVMRGLARPSGSLIAPEIAGYAKSLDTFEPADPAKAQKLLA 351

Query: 342 NQGWT--------LNDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDI 393
           + G          +ND+ + E +                   I + +   LK  G Q  I
Sbjct: 352 DAGMKNLAFTYTCMNDESVNEED-------------------ICSGVANMLKRGGFQPTI 392

Query: 394 AIDNSSAIPAKHHDGTLEMALIARNFGTIADPLPLLLSDFATHQGSDWGPTN---WSSPQ 450
            I   S    K + G  ++  ++       D   +L    +T +G+  G +N   WS+P+
Sbjct: 393 DIAPRSVQSPKRNGGKADVFNLSWANEPTLDAFSMLSQILSTRKGA-MGVSNYGGWSNPE 451

Query: 451 FSQLLAELSTESDNARYQQLAAQASQLLADEMPLIPV 487
             +L+A+ + E DN +   L   A ++  DE  L+P+
Sbjct: 452 IDKLVAQAAQEQDNTKRLALEEAALKIAKDETMLVPL 488



 Score = 25.0 bits (53), Expect = 0.007
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 236 GQADLVYTLDPISIPSLQQSHNLDLYIESMPR 267
           G+ADL Y+LDP S+PS      L+   E + R
Sbjct: 30  GRADL-YSLDPYSVPSTSNLAFLNHIYEGLVR 60