Pairwise Alignments

Query, 521 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 89.4 bits (220), Expect = 3e-22
 Identities = 107/461 (23%), Positives = 188/461 (40%), Gaps = 37/461 (8%)

Query: 65  QVVESLVGINENSQPYPLLAKSWTVSDDGLVWRFQIRPEVQFHDGSQLTAQAAATALN-- 122
           +V E L+  + +  P PLLAKSW VS DGL + F +RP V++HDG   T+   A +++  
Sbjct: 67  KVTEGLLTYDFDLNPKPLLAKSWDVSADGLRYTFNLRPGVKWHDGKPFTSADVAFSISTI 126

Query: 123 ---HALGKPGVIKQVPIKAITAQNDQVVIELNTVYRPLAAVLAHYSLAIASPSSYD---A 176
              H  G+   +    ++  T      V+ L+     L   LA     I     Y+    
Sbjct: 127 KEVHPRGRNTFLNLTAVE--TPNELTAVLVLSKPAPYLITALAAAETPIVPKHLYEGTKV 184

Query: 177 SGNVIRL--LGTGPYQIAQLQAPHKASVIRFNAYWGKPAS-IETINYLAGHRSESRALLA 233
           + N + L  +GTGP++  +          R   YW  P   ++ +       + +RA+  
Sbjct: 185 TENPVNLAPIGTGPFKFKEWVRGSHIVFERNADYWDAPRPYLDRLIVRFIPDASARAIAI 244

Query: 234 QTGQADLVYT-------LDPI-SIPSLQQSHNLDLYIESMPRTVLIKLNNEHPLLNHADV 285
           +TG+ DL  +       LD +  +PSL    N   Y  S+ R   ++ N E  +     V
Sbjct: 245 ETGEIDLAPSTPVAYSDLDRLKELPSLGFDTNGYQYTNSISR---VEFNLEKDVFKDVRV 301

Query: 286 RQAISLAINREGIAQSVLKLPGSEAHQLFSPALGAWHLADKTQPQRHLATAQTLLANQGW 345
           R+A +  I+R  I  +V    G+      +P L  W + D       L  A+ LL   G+
Sbjct: 302 RRAFAHVIDRNVIFNTVNFGYGATIAGPINPKLTKWFVNDLKTYPIDLKAAEALLDEAGY 361

Query: 346 TLNDQGLLEREGQAFRVQLLTYADRPELPLIATALQAQLKEIGIQVDIAIDNSSAIPAK- 404
                G+       F++ L         P  A  ++  L ++G+ V +   + +    + 
Sbjct: 362 KRGADGI------RFKLNLDYVPSTEAYPRGADYIRQALAKVGVDVTVRTQDFATYTKRI 415

Query: 405 HHDGTLEMALIARNFGTIADPLPLLLSDFATHQGSDWGPTN----WSSPQFSQLLAELST 460
           + D   + A        + DP   +   + +       P +    +S+P+   LL   + 
Sbjct: 416 YTDRDFDFAY--EGMSNLFDPTVGVQRLYWSKNFKKGVPFSNGAAYSNPKVDALLEAAAI 473

Query: 461 ESDNARYQQLAAQASQLLADEMPLIPVTYYRQIVSVNKRVA 501
           E D  +      +  Q+L +++P I +    +I   NKR+A
Sbjct: 474 EIDPDKRVAQWKEIQQILVEDVPAIDIVAAPEITIFNKRIA 514