Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 890 a.a., Sensor histidine kinase RcsC from Xanthobacter sp. DMC5

 Score =  294 bits (753), Expect = 1e-83
 Identities = 168/446 (37%), Positives = 262/446 (58%), Gaps = 13/446 (2%)

Query: 277 QTQVEPVAIVDLPAVEPPVATVAPVI-ANPKESATNKPAKTDSSVSSIRVDIEKVDNLIN 335
           +T+V+P+     PA  P  A   P   A+   +A         +  SIRV +  ++ L+ 
Sbjct: 165 ETKVDPLPPAPAPAAPPKPAPAMPKADADATHAAAQAGEAHGVAAQSIRVHVGVLEQLMT 224

Query: 336 LVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRF 395
           +V ELV+T++ L E+       +    K  L +L   + +LQE V+  RM P+  A+ + 
Sbjct: 225 MVSELVLTRNQLMEIARRHDEPEY---KVSLQRLSNVTGELQEAVMRTRMQPIGNAWQKL 281

Query: 396 PRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKG 455
           PR+VRDL   LGK+++L+  G  TELD+ VL++I DPL H+VRN  DHG+EMP+ R A G
Sbjct: 282 PRIVRDLAQELGKQIELEQVGADTELDRQVLDQIKDPLTHMVRNSADHGLEMPEQRRAAG 341

Query: 456 KPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIIN 515
           K E G+I L A+H+GG +IVEISDDG G+D  ++ +KA+E G L  + + + + D Q+  
Sbjct: 342 KSERGLIRLSAYHEGGHVIVEISDDGRGLDVARIKQKALENG-LATEAELAKMPDSQVFR 400

Query: 516 LIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAIL 575
            IF  GFSTA++V+++SGRGVGMDVVR N+E +GG ++V S  G GS F I +PLTLAI+
Sbjct: 401 FIFHAGFSTAQKVTNVSGRGVGMDVVRSNLESIGGTVDVRSRQGEGSTFVIKIPLTLAIV 460

Query: 576 DGQLVKVADQVYVIPLLTIVESIQINTASVKHAA--GGIELYRLREENIPILRLQDELAM 633
              +V+ A + + +P   + E +++   S           +  LR+  +PI+ L   L +
Sbjct: 461 PALIVRAAGERFALPQSAVEELVRVQAGSDHEITWLNNSPVLGLRDRLLPIVSLGALLGL 520

Query: 634 -----GRSGSLEKRLICFVESAGHRV-GLLVDDLLDQQQVVIKSLESNYAKVAGISGATI 687
                GR  +L +R +  V   GH+  G++V+ +   +++V+K + S   ++  +SG+TI
Sbjct: 521 SPERDGRDEALWERALIVVMKVGHQTFGVVVEAVSHTEEIVVKPMASALRQLPMVSGSTI 580

Query: 688 LGDGSVSLILDIPGLIAHFMKRSSSS 713
           LGDG V +ILD  GL  H   R  ++
Sbjct: 581 LGDGRVIMILDPAGLAQHAAARGGAA 606



 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 5   MEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISE 64
           M+ L + F  E  E+L+  + EL++ +    + ++LN IFR  H+IKG  G   L  ++ 
Sbjct: 1   MDDLLREFLTETSESLDVADVELVKFEQDPNNAQILNNIFRLVHTIKGTCGFIGLPRLAS 60

Query: 65  FTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQ 107
             HA ET +D  R + + +T   V  +L + D I+ +L   E+
Sbjct: 61  LAHAAETLMDRFR-EGRPVTTDAVGLVLSTIDRIKLLLQHVEE 102