Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 754 a.a., chemotaxis protein CheA from Pseudomonas simiae WCS417

 Score =  209 bits (531), Expect = 5e-58
 Identities = 141/474 (29%), Positives = 241/474 (50%), Gaps = 61/474 (12%)

Query: 281 EPVAIVDLPAVEPPVATVAPVIANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGE- 339
           EPV +V+    EP  A   PV+A P     +    T+     +RV  E++++L++L  + 
Sbjct: 140 EPVPVVEALPPEPEPAP--PVVAEPPR---HNKRMTEGGERVLRVTAERLNSLLDLSSKS 194

Query: 340 LVITQSMLTELGN--------DFSMDKLDKLKAGL----------------------AQL 369
           LV TQ +   L +          S+  LD L   L                      AQ 
Sbjct: 195 LVETQRLKPYLASLQRLKRIQSQSVRALDTLDGQLKTENLNLEAQEALADTRRLLSEAQA 254

Query: 370 L----------------QNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQ 413
           L                Q ++ L +  L  RM P +   +   R+VRDL   LGK+V L+
Sbjct: 255 LLAEKTAELDEFGWQAGQRAQVLYDTALACRMRPFADVLAGQVRMVRDLGRSLGKQVRLE 314

Query: 414 IQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSI 473
           I+G++T++D+ VLE++  PL HL+RN +DHG+EMP+ RL  GKP  G+I L+A HQ G +
Sbjct: 315 IEGDKTQVDRDVLEKLEAPLTHLLRNAVDHGIEMPEQRLLAGKPAEGLIRLRASHQAGLL 374

Query: 474 IVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISG 533
           ++E+SDDG G+D ++L    V++  L P      L++++++  +F PGFS  ++V+++SG
Sbjct: 375 VLELSDDGNGVDLERLRGTIVDRH-LSPLETAQRLSEEELLTFLFLPGFSLRDKVTEVSG 433

Query: 534 RGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLT 593
           RGVG+D V+  + +L G + ++   G+GSRF + +PLTL+++   +V+V ++ Y  PL  
Sbjct: 434 RGVGLDAVQHMVRQLRGAVVLEQTAGQGSRFHLEVPLTLSVVRSLVVEVGEEAYAFPLAH 493

Query: 594 IVESIQINTASVKHAAGGIELYRLREENIPILR----LQDELAMGRSGSLEKRLICFVES 649
           I     +    +    G    +     ++ ++     LQ       S +L+   +  +  
Sbjct: 494 IERMCDLAPDDIVQLEGRQHFWH-EGRHVGLVAASQLLQRPTGQNPSDTLK---VVVIRE 549

Query: 650 AGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLI 703
                G+ V+  + ++ +V+  L+    KV  IS   +L DGSV LI+D+  ++
Sbjct: 550 RDAVYGIAVERFIGERTLVVLPLDDRLGKVQDISAGALLDDGSVVLIVDVEDML 603



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 24/91 (26%), Positives = 42/91 (46%)

Query: 8   LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
           L ++F +E     + L   LL L+ +    + L    RAAHS+KG A    +      +H
Sbjct: 11  LLELFSLEADAQTQVLSAGLLALERNPTQADQLEACMRAAHSLKGAARIVGVDAGVSVSH 70

Query: 68  AVETYLDLIRNQKKQLTAQGVDTLLKSCDVI 98
            +E  L   +  +  L  + +D LL+  D++
Sbjct: 71  VMEDCLVSAQESRLYLQPEHIDALLQGTDLL 101