Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1646 a.a., signal transduction histidine kinase CheA/CheY-like receiver from Pseudomonas putida KT2440

 Score =  246 bits (629), Expect = 5e-69
 Identities = 139/353 (39%), Positives = 211/353 (59%), Gaps = 16/353 (4%)

Query: 366  LAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTV 425
            L Q  + +  LQE +    M+P      R  R+VR +   LGK+V+L +   + ELD++V
Sbjct: 1158 LQQQARVNSQLQEGLTATLMVPFERLVPRLQRVVRQVASELGKQVELVVGNAEGELDRSV 1217

Query: 426  LERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGID 485
            LER+V PL H++RN +DHG+E   +RLA GKPE G I L   H+G  I++E++DDGAG+ 
Sbjct: 1218 LERMVAPLEHMLRNAVDHGLESRAMRLAAGKPEQGTIHLNLLHEGADIVIEMTDDGAGVP 1277

Query: 486  CDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNI 545
             + + RKA+++G+L+PQ Q   L+D +I+  I  PGFSTAE+++ ISGRG+GMDVV   +
Sbjct: 1278 LEAVRRKAIKRGLLDPQAQ---LSDHEILQFILRPGFSTAEKITQISGRGLGMDVVHEEV 1334

Query: 546  EELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTA-- 603
            ++LGG + ++S  G+G+RF I LP T++I    +V + ++ Y IPL TI   +++  A  
Sbjct: 1335 KQLGGSMSIESAQGKGARFLIRLPFTVSINRALMVHLGEEQYAIPLNTIEGIVRVPPAEL 1394

Query: 604  -------SVKHAAGGIELYRLREENIPILRLQDELAMGRSGSLEKRLICFVESAGHRVGL 656
                   S ++   G E Y LR     +  L     +G+S  L    +  V S      +
Sbjct: 1395 AACYQLDSPRYVYAGHE-YELRYLGELLQGLPRPALLGQSVPLP---VLLVHSKEQSFAI 1450

Query: 657  LVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIAHFMKR 709
              D L   +++V+KSL   +A VAG+SGAT+LGDG V LILD+ G +    +R
Sbjct: 1451 QADSLSPSREIVVKSLGPQFAAVAGLSGATLLGDGRVVLILDLLGQLRGQQRR 1503



 Score = 37.0 bits (84), Expect = 8e-06
 Identities = 22/86 (25%), Positives = 39/86 (45%)

Query: 6   EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
           ++LR++F  E  E L  +E   L+        E L  + RA H++KG     +   ++E 
Sbjct: 439 DELRQVFLDEAGELLPEIERHWLRWRADNQQREALGEVRRALHTLKGSGRMVHAEAVAEL 498

Query: 66  THAVETYLDLIRNQKKQLTAQGVDTL 91
               E  L+ +   +  L+ +GV  L
Sbjct: 499 AWGAEHLLNRVLEGRSVLSPEGVVAL 524



 Score = 28.5 bits (62), Expect = 0.003
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 265  QAAPAATLQSNPQTQVEPVAIVDLPAVE-PPVATVAPVIANPKESATNKPAKTDSSVSSI 323
            Q   AAT   +        A+ D  A + PP A  A + A   E A             +
Sbjct: 991  QPLHAATALIDYIRNFSSAALTDSAAGQGPPEAATAEIPAAAPERAPG---------DMV 1041

Query: 324  RVDIEKVDNLINLVGELVITQSMLTELGND--FSMDKLD 360
            +VD E +D+L NL GE  I +  + +  ND  F++++++
Sbjct: 1042 KVDAELLDDLGNLAGEHSIIRGRIEQQVNDAQFALNEME 1080