Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 762 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  221 bits (562), Expect = 1e-61
 Identities = 129/397 (32%), Positives = 217/397 (54%), Gaps = 4/397 (1%)

Query: 319 SVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQE 378
           ++  +R+ +E       ++  L  TQ +L E          D  + G  Q  Q ++ L +
Sbjct: 229 ALDGLRMQLEDTGQGNEVLEALAQTQRLLAETQRILQQQAADLDEFGW-QASQRAQLLYD 287

Query: 379 NVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIVDPLVHLVR 438
             L  RM P +   +   R+VRDL   LGK V L ++GE+T++D+ VLE++  PL HL+R
Sbjct: 288 TALACRMRPFADVLTGQSRMVRDLGRSLGKPVRLVVEGEKTQVDRDVLEKLEAPLTHLLR 347

Query: 439 NGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLWRKAVEKGV 498
           N +DHG+E+P+ RL  GKP+ GVI L+A HQ G + +E+ DDGAGID ++L R ++ +  
Sbjct: 348 NAVDHGIELPERRLLAGKPDEGVIRLRASHQAGMLSLELIDDGAGIDLERL-RSSIVERA 406

Query: 499 LEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGGQIEVDSEL 558
           L P    + +++ +++  +F PGFS  ++V+++SGRGVG+D V+  I EL G IE+    
Sbjct: 407 LSPADTVARMSEAELLTFLFLPGFSLRDKVTEVSGRGVGLDAVQHLIRELRGSIELTQVA 466

Query: 559 GRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAAGGIELYRLR 618
           G+G RF + +PLTL+++   +V+V  + Y  PL  I  ++++    +    G    +   
Sbjct: 467 GQGCRFHLQVPLTLSVVRSLVVEVGGEAYAFPLAHIERTLEVTAEQIVQIEGRQHFWH-E 525

Query: 619 EENIPILRLQDELAMGRSGSLEKRL-ICFVESAGHRVGLLVDDLLDQQQVVIKSLESNYA 677
             +I ++     L      S E  L +  +       G+ V+ L+ ++ +V+  L+    
Sbjct: 526 GRHIGLVAASQLLNRPAGQSDEASLRVVVIREREQLYGVAVERLVGERVLVVMPLDPRLG 585

Query: 678 KVAGISGATILGDGSVSLILDIPGLIAHFMKRSSSST 714
           KV  IS   +L DGSV LI+D+  L+    K  S+ +
Sbjct: 586 KVQDISSGALLDDGSVVLIVDVEDLLRSLEKLLSTGS 622



 Score = 46.2 bits (108), Expect = 6e-09
 Identities = 25/91 (27%), Positives = 44/91 (48%)

Query: 8   LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
           L ++F +E     + L   L+ L+ +    + L    RAAHS+KG A    +       H
Sbjct: 11  LLELFSLEAEAQTQVLNAGLMALERNPTQADQLEACMRAAHSLKGAARIVGVDAGVSVAH 70

Query: 68  AVETYLDLIRNQKKQLTAQGVDTLLKSCDVI 98
            +E  L   +  + +LTA+ +D LL+  D++
Sbjct: 71  VMEDCLVAAQEGRLRLTAEHIDALLQGTDLL 101