Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1974 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  191 bits (486), Expect = 2e-52
 Identities = 112/331 (33%), Positives = 189/331 (57%), Gaps = 11/331 (3%)

Query: 371  QNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERIV 430
            + +++LQ ++L  RM+       R  R+VR      GK+V L I G   E+D+ VL+R+ 
Sbjct: 1481 RQTRELQRDLLRTRMVEFEGISERLYRVVRQASKETGKQVRLDITGGNIEMDRGVLDRMT 1540

Query: 431  DPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKLW 490
                HL+RN + HG+E+P+ R   GKP  G I +   H+   + +  +DDGAG+D  +L 
Sbjct: 1541 AAFEHLLRNSVAHGIEVPERRQQAGKPAEGQIEIVLGHELNDVSLVFTDDGAGLDLVRLR 1600

Query: 491  RKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELGG 550
             K   +G++ P TQ   L+D++   L+F PG STA +VS+++GRG+GMDVVR ++  LGG
Sbjct: 1601 EKGQAQGLIPPGTQ---LSDEEAAQLVFEPGISTAREVSELAGRGIGMDVVRNDVVALGG 1657

Query: 551  QIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIP--LLTIVESIQINTASVKHA 608
            +IE  ++ G+G+ F + LPLT A+    +++       +P  L+ +V  +     +  +A
Sbjct: 1658 RIETATQAGQGTSFKLVLPLTTAVTQVVMLRAGGLTVGVPSNLVEVVRRLGNEDLAKAYA 1717

Query: 609  AGGIELYRLREENIPILRLQDEL-AMGRSGSLEKRL--ICFVESAGHRVGLLVDDLLDQQ 665
            +G +    +  E++P       L +  RS  +  R   +    SA  RV L VD++L  Q
Sbjct: 1718 SGHL---NVAGEDVPFYWSGALLQSSPRSTEVHGRTQPVVIFRSAAQRVALHVDEVLGNQ 1774

Query: 666  QVVIKSLESNYAKVAGISGATILGDGSVSLI 696
            +VV+K+L S  +++ G++G ++L  G+V+LI
Sbjct: 1775 EVVVKNLGSQLSRLPGLAGMSVLASGAVALI 1805



 Score = 37.7 bits (86), Expect = 6e-06
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 4   DMEQLRKIFHVECRE----NLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNL 59
           D + L  IF  E RE     LE +    LQ+ PS  DLE L T+ RA H++KG +    L
Sbjct: 693 DEDDLLDIFLEEAREVVANGLEAVSH--LQVQPS--DLEHLTTLRRAFHTLKGSSRMVGL 748

Query: 60  HEISEFTHAVETYLDLIRNQKK 81
            E  E   A+E  L+ +  +++
Sbjct: 749 DEFGEAAWAMEQLLNTVLAEQR 770



 Score = 28.1 bits (61), Expect = 0.004
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 11   IFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTHAVE 70
            IF  E +E +  L+G L Q      +      + R  H++KG A       + E  H +E
Sbjct: 1204 IFAEEAQELIPQLDGALRQWVARPDNGSARAEVLRNLHTLKGSARLAGALRLGEMAHRME 1263

Query: 71   TYL-----DLIRNQKKQLTAQGVDTLLKSCDVIRN 100
            T       DL R    +      D +    + +RN
Sbjct: 1264 TAAERLGSDLQRGADLEALQTAFDAISARFEQLRN 1298