Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  465 bits (1197), Expect = e-135
 Identities = 289/701 (41%), Positives = 418/701 (59%), Gaps = 47/701 (6%)

Query: 3   LDMEQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEI 62
           +D+    + F  E  E L  +E  LL L P   D E LN IFRAAHSIKGGAGTF    +
Sbjct: 1   MDISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTIL 60

Query: 63  SEFTHAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALKQQVGAE 122
            E TH +E  LD  R  + QL    ++  L++ D+++  LD+ +     D A  + +   
Sbjct: 61  QETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNA 120

Query: 123 LQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSGND 182
           L+ L  +   +   +  +  + +   + +  +++A  ++     ++R V    L     +
Sbjct: 121 LRQLALEAKGETTPAVVETAALS---AAIQEESVAETESPRDESKLRIV----LSRLKAN 173

Query: 183 PLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWVE 242
            + +L E  ELG+          L  L ++      LS T  L G V+E+D+  +  +V 
Sbjct: 174 EVDLLEE--ELGN----------LATLTDVVKGADSLSAT--LDGSVAEDDIVAVLCFV- 218

Query: 243 DECDLHIAPILSDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVI 302
                    I +D+ +   E   AAP    Q   +T+V PVA    PAV  P A  A   
Sbjct: 219 ---------IEADQIA--FEKVVAAPVEKAQE--KTEVAPVAP---PAVVAPAAKSA--- 259

Query: 303 ANPKESATNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKL 362
           A+   +   KPA+   S +SIRV +EKVD LINLVGELVITQSML +  N+        L
Sbjct: 260 AHEHHAGREKPARERES-TSIRVAVEKVDQLINLVGELVITQSMLAQRSNELDPVNHGDL 318

Query: 363 KAGLAQLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELD 422
              + QL +N++DLQE+V++IRM+PM + FSRFPRLVRDL G+LGK+V+L + G  TELD
Sbjct: 319 ITSMGQLQRNARDLQESVMSIRMMPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSSTELD 378

Query: 423 KTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGA 482
           K+++ERI+DPL HLVRN +DHG+EMP+ RL  GK   G + L A HQGG+I +E++DDGA
Sbjct: 379 KSLIERIIDPLTHLVRNSLDHGIEMPEKRLEAGKNVVGNLILSAEHQGGNICIEVTDDGA 438

Query: 483 GIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVR 542
           G++ +++  KA+ +G+        ++TD ++  LIFAPGFSTAEQV+D+SGRGVGMDVV+
Sbjct: 439 GLNRERILAKAMSQGM----AVNENMTDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVK 494

Query: 543 RNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINT 602
           RNI+E+GG +E+ S+ G G+   I LPLTLAILDG  V+VA +V+++PL  ++ES+Q   
Sbjct: 495 RNIQEMGGHVEIQSKQGSGTTIRILLPLTLAILDGMSVRVAGEVFILPLNAVMESLQPRE 554

Query: 603 ASVKHAAGGIELYRLREENIPILRLQDELAM-GRSGSLEKRLICFVESAGHRVGLLVDDL 661
             +   AGG  +  +R E +P++ L     + G      + ++  ++SAG R  LLVD L
Sbjct: 555 EDLHPLAGGERVLEVRGEYLPLVELWKVFDVDGAKTEATQGIVVILQSAGRRYALLVDQL 614

Query: 662 LDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGL 702
           + Q QVV+K+LESNY KV GIS ATILGDGSV+LI+D+  L
Sbjct: 615 IGQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSAL 655