Pairwise Alignments
Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056
Subject, 2224 a.a., Chemotaxis protein histidine kinase and related kinases from Kangiella aquimarina DSM 16071
Score = 229 bits (584), Expect = 1e-63
Identities = 146/422 (34%), Positives = 237/422 (56%), Gaps = 31/422 (7%)
Query: 306 KESATNKPAKTDSSVSSIR----VDIEKVDNLI--NLVGELVITQSMLTELGNDFSMDKL 359
+E N +T++ V R VD ++ D L + +T+S+L + S+ +
Sbjct: 1670 REQLRNLEIETEAQVLYRREISGVDFDEFDPLEMDRYTRQQELTRSLLEAASDLMSIQET 1729
Query: 360 DKLKAGLAQ--LLQNSK---DLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQI 414
+ K G A+ LL + +LQ+ ++ RM+P + SR R+VR + L K VDL +
Sbjct: 1730 LETKVGDAEATLLAQGRVNTELQDRLMRTRMVPFNSIESRLRRMVRQISTELNKDVDLIL 1789
Query: 415 QGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSII 474
+ E E+D+TV+ER+V PL H++RN IDHG+E D R GK E G + L +G +
Sbjct: 1790 ESEG-EMDRTVIERMVAPLDHMLRNAIDHGIESKDERKKAGKAEKGTVHLSLSRRGNEVY 1848
Query: 475 VEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGR 534
++I DDGAGI DK+ ++A+ +G+++ + + TD+++ LI PGFSTAE V+ ISGR
Sbjct: 1849 IQIQDDGAGIRKDKVRKRAISQGMID---ESYNPTDRELFRLILQPGFSTAETVTQISGR 1905
Query: 535 GVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTI 594
GVGMDVV I +LGG + + SE G+G+ T+ LP TL+ +VKV + Y IPL I
Sbjct: 1906 GVGMDVVHSEILQLGGSLNISSEEGKGTTMTVRLPFTLSSNQALMVKVKGEPYAIPLSNI 1965
Query: 595 VESIQINTASVKHAAGGIELYRLREENIPILRLQDEL-----AMGRSGSL-----EKRLI 644
+++ V +E+Y+ +++ L + EL + R+ + E +
Sbjct: 1966 TTVARVSAKEV------LEIYQDKDKTFTHLGEEYELRYLGQILDRNSDIVPPVDEFVPV 2019
Query: 645 CFVESAGHRVGLLVDDLLDQQQVVIKSLESNYAKVAGISGATILGDGSVSLILDIPGLIA 704
++ + + VD+L+ +++V+K++ + V GISGA+ILGDGSV LILD+ L+
Sbjct: 2020 LIIQGEDKPIAVHVDELIGSREIVVKNIGRQISTVPGISGASILGDGSVVLILDMQTLVD 2079
Query: 705 HF 706
F
Sbjct: 2080 RF 2081
Score = 45.1 bits (105), Expect = 4e-08
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
E+L ++F E E L + E + + ++E LNT R H++K GA + + E
Sbjct: 1456 EELAELFLGEASELLTSYEEAIERWSNDLHNVEPLNTAMRNLHTLKSGAKLAAITPVGEL 1515
Query: 66 THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLD 103
TH +E ++ + + A+ D L +S D + M+D
Sbjct: 1516 THKLEGVVEALARDPRLGHARWADMLRRSYDELHEMVD 1553
Score = 44.3 bits (103), Expect = 7e-08
Identities = 102/484 (21%), Positives = 176/484 (36%), Gaps = 90/484 (18%)
Query: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
++L +IF E E ++ L + +L+++ + R H++KG A I +
Sbjct: 1271 DELLEIFSEEAEELFDSDANLLQKWRQEPNNLKIIAELQRNLHTLKGSARMAGFSPIGDL 1330
Query: 66 THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVI------RN----------MLDSREQET 109
H +E I +Q + + +D ++ D + RN MLD E
Sbjct: 1331 AHGLEDLYTAITDQLFASSEEAIDLAERAEDKLLAIFNARNTPEKIPSPAAMLDEIEGFI 1390
Query: 110 AIDEALKQQVGAELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIP-------DAT 162
A +A + V + +A +A + S+ + T + A D
Sbjct: 1391 AAQKAGRAYVRPQSEADIAPAAEEVKPSEPEKAEETTPVAETQQPAEPEEIESKEEIDTE 1450
Query: 163 AQGWRIRFVP-------------HETLFYSGND-----PLRI-LRELRELGSEYQI---- 199
W E + ND PL +R L L S ++
Sbjct: 1451 EAAWNEELAELFLGEASELLTSYEEAIERWSNDLHNVEPLNTAMRNLHTLKSGAKLAAIT 1510
Query: 200 ---ELDH--QALPELAEIDPELCYLSWTIRLTGDVSENDVRELFDWVED-ECDLHIAPIL 253
EL H + + E DP L + W L S +++ E+ D V + + A +L
Sbjct: 1511 PVGELTHKLEGVVEALARDPRLGHARWADMLRR--SYDELHEMVDQVRNGQMPAKPAELL 1568
Query: 254 ----SDEASAHVEDEQAAPAATLQSNPQTQVEPVAIVDLPAVEPPVATVAPVIANPKESA 309
+D+A+ + EQ +S Q +V+ V++ D ++
Sbjct: 1569 RKLENDKATIESQLEQLDKRDLAESGEQAEVKIVSLAD------------------RQKQ 1610
Query: 310 TNKPAKTDSSVSSIRVDIEKVDNLINLVGELVITQSMLTELGND--FSMDKLDKLKAGLA 367
+ AK ++ IRV E +DNL+NL GE I +S L + D F++ ++ L
Sbjct: 1611 KEEEAKEAANRDVIRVRSEVLDNLVNLSGEASIFRSRLEQQVADLNFNLGEMSSTVDRLR 1670
Query: 368 QLLQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLE 427
+ L+N + E + R F F L D R Q EL +++LE
Sbjct: 1671 EQLRNLEIETEAQVLYRREISGVDFDEFDPLEMDRYTR------------QQELTRSLLE 1718
Query: 428 RIVD 431
D
Sbjct: 1719 AASD 1722
Score = 39.7 bits (91), Expect = 2e-06
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
+++R+IF E E LE + L + Q + E ++TI R H++KG +I E
Sbjct: 599 DEVREIFIEEADEVLEEMHSLLPEWKQDQTNKEAISTIRRNFHTLKGSGRMVGATDIGEL 658
Query: 66 THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAIDEALK 116
+ A+E L+ + + + T L + + + N L ++ A E K
Sbjct: 659 SWAIENMLNRLIDHSIEYT----PALFVTTEEVANTLPEMVKQFASGEKTK 705
Score = 38.9 bits (89), Expect = 3e-06
Identities = 74/404 (18%), Positives = 162/404 (40%), Gaps = 54/404 (13%)
Query: 6 EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
++L IF E ++ +LE Q ++ + + R+ H++KG A N+ ++
Sbjct: 743 QELFDIFKQEAEGHVTSLEMFANQRQQGITQSQISDNLLRSLHTLKGVAHIANIQSLTNV 802
Query: 66 THAVETYLDLIRNQKKQLTAQGVDTLL--KSCDVIRNMLDSREQETAI---DEALKQQVG 120
VE+Y ++ ++L A+ D L + D++R+++ + E + I ++ + QQ+
Sbjct: 803 IVPVESYFQELKT--RELLAEEADMSLIDHTKDLLRHIISTPEDDQVISAHEDEILQQLA 860
Query: 121 AELQALLADQGADRVMSQAQPVSSNTHTSNMHADAIAIPDATAQGWRIRFVPHETLFYSG 180
+ + D+ + Q + N+ +D + ++T ++ P
Sbjct: 861 QQQKRF--DESGETGQEQGRDPELIKDIFNIASDVLVDIEST----NLQETPEPQRLERI 914
Query: 181 NDPLRILRELRELGSEYQIELDHQALPELAEIDPELCYLSWTIRLTGDVSEND------V 234
+ + + L+ + SE EL EI+ + LS ++ ++ D +
Sbjct: 915 SYLMASVERLKSILSE----------AELNEIEQVVAALSDALQRNMTANKVDTSIGTLL 964
Query: 235 RELFDWVEDECDLHIAPILSDEASAHVEDEQA-APAATLQSNPQTQVEPVAIVDLPAVE- 292
+E ++ +E++ D A + EA V+ Q PA T ++ E +++ + V+
Sbjct: 965 QEAYNQLENQFDCLAANLSIPEARDLVQALQTWKPAETTGLELESAPEEISLGESEEVQF 1024
Query: 293 ---PPVATVAPVIANPKESATNK--------------PAKTDSSVSSIRVDIE--KVDNL 333
P + P +E + P+KT+ ++ D E K DN
Sbjct: 1025 EETPEESVQVPTTEEKEEQRATQDDNSIEFNLDDFTPPSKTEEKPAAETKDRETSKDDNS 1084
Query: 334 INLVGELVITQSMLTELGNDFSMDKLDKLKAGLAQLLQNSKDLQ 377
+ E + LT+ + +K ++ K A NS + +
Sbjct: 1085 L----EFTLEDDFLTKESEEVQEEKSEEKKEEKATTDDNSVEFE 1124