Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 683 a.a., Gliding motility regulatory protein from Alteromonas macleodii MIT1002

 Score =  141 bits (355), Expect = 1e-37
 Identities = 118/407 (28%), Positives = 204/407 (50%), Gaps = 34/407 (8%)

Query: 318 SSVSSIRVDIEKVDNLINLVGELVITQSMLTELGNDFSMDKLDKLKAGL--------AQL 369
           SS +S+  +I KV+ +++      +  S  TE   D  +DK  K+ + L        ++L
Sbjct: 168 SSGNSVLENIGKVEKVLSH-----LCTSNRTEAIQD--IDKASKMLSSLKEQTKKISSEL 220

Query: 370 LQNSKDLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKKVDLQIQGEQTELDKTVLERI 429
               K L++ VL  R+ P+S A       +R       + V+ + +G     D+ ++ER+
Sbjct: 221 QNRLKTLEKVVLKSRLKPISDACEPVQAFLRSE----ERTVNFEARGVHHSTDRYIVERL 276

Query: 430 VDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQGGSIIVEISDDGAGIDCDKL 489
              L+HL RN I+HG E    R+ +GK     I ++   +G +I +  +DDG GID D+L
Sbjct: 277 TTVLMHLARNSIEHGFEDTQERVRQGKAPHCKIEIEVRKEGRNIRLLYADDGKGIDRDRL 336

Query: 490 WRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVSDISGRGVGMDVVRRNIEELG 549
            +  V  G +        L D   +N++F PG ST+E+VS +SGRGVG+  V+  I E+ 
Sbjct: 337 RKAIVGLGDVS-------LNDDINLNVLFQPGVSTSEKVSKVSGRGVGLYAVQCAISEMR 389

Query: 550 GQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVIPLLTIVESIQINTASVKHAA 609
           G I V+S  G G +F + +P  LA  D  +  VAD    I    I  +  +  +S K+  
Sbjct: 390 GSIAVESTPGNGIQFDLVIPQDLANFDVLIATVADTNIAIDPNHIEYTCSL-PSSYKYKN 448

Query: 610 GGIELYRLREENIPILRLQDELAMGRSGSLEKRLICFVESAGHRVGLLVDDLLDQQQVVI 669
               L  +  +  PI+ L   + +G++ +L K  I    ++ H+  L+VD L+  + V++
Sbjct: 449 VHNHLIEIEGKTYPIIEL-PPIFIGKA-TLAKAAIVLKHNS-HKYVLIVDQLIGLESVIV 505

Query: 670 KSLESNYAKVAGISGATILGDGSVSLILDIPGLIAHFMKRSSSSTTK 716
           ++L     +  G+SGA I     ++L++D    +AH +  + +S T+
Sbjct: 506 RTLFEQIGESPGLSGAAIRDGRDIALLID----VAHVVSFNLTSPTR 548



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 27/103 (26%), Positives = 56/103 (54%)

Query: 6   EQLRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEF 65
           ++L + FH+E  E+L+ +   +  +  +  D + LN +FRAAHS+KG A +    ++ + 
Sbjct: 8   KRLIETFHLEMDEHLQVMSEVIPGMKFNSRDEDKLNLLFRAAHSLKGAARSVGNSQVEDI 67

Query: 66  THAVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQE 108
            H  E++L  ++   K ++   + T LK+   ++ + +S   E
Sbjct: 68  CHVFESFLSELKKSDKLISKDDLATALKNLTALKRLRNSNSGE 110