Pairwise Alignments

Query, 720 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 1460 a.a., Sensor histidine kinase RcsC from Acinetobacter radioresistens SK82

 Score =  234 bits (598), Expect = 2e-65
 Identities = 136/357 (38%), Positives = 214/357 (59%), Gaps = 15/357 (4%)

Query: 353  DFSMDKLDKLKAGLAQLLQNSK---DLQENVLNIRMLPMSFAFSRFPRLVRDLCGRLGKK 409
            DF     +K++     LLQ S+   ++QEN++  R++P S    R  R+ R     L + 
Sbjct: 956  DFKTTLSEKIRDTEGLLLQQSRIQAEIQENLMRTRLVPFSRLLPRLQRIARQTSSALNRP 1015

Query: 410  VDLQIQGEQTELDKTVLERIVDPLVHLVRNGIDHGVEMPDVRLAKGKPETGVITLKAFHQ 469
             +L +Q  + ELD+ +LER+V PL H++RN IDHG+E  + RL +GKPE+G I L    Q
Sbjct: 1016 AELVVQNTEGELDRNILERLVTPLEHMLRNAIDHGIETIEQRLKQGKPESGRIELNINRQ 1075

Query: 470  GGSIIVEISDDGAGIDCDKLWRKAVEKGVLEPQTQRSDLTDKQIINLIFAPGFSTAEQVS 529
            G  +I+  +DDG GI+ +KL  KA+E+G++  + +   L  +++  LIF PG STA +++
Sbjct: 1076 GTDVIITFTDDGQGINLEKLKNKALERGLIGAEQK---LEAEELAQLIFHPGLSTAVEIT 1132

Query: 530  DISGRGVGMDVVRRNIEELGGQIEVDSELGRGSRFTISLPLTLAILDGQLVKVADQVYVI 589
             ISGRGVG+DVV+ +I+ +GG + V+S  G+G+ FTI +P T+AI D  +VK  DQ Y +
Sbjct: 1133 QISGRGVGLDVVQSSIKAMGGHVTVESVQGQGTTFTIRVPTTVAISDALMVKAGDQQYAV 1192

Query: 590  PLLTIVESIQINTASVK-HAAGGIELYRLREENIPILRLQDELAMGRS-----GSLEKRL 643
            PL  I   ++I+ + ++ + AG  + +R+ +     LR   E    +S     G +    
Sbjct: 1193 PLAQIERIVRISPSMLEDYFAGKEDTFRI-DNMYYKLRYLSEFVANQSLPRLTGIVHSLP 1251

Query: 644  ICFVE-SAGHRVGLLVDDLL-DQQQVVIKSLESNYAKVAGISGATILGDGSVSLILD 698
            +  ++ S+G  V LLVD L+  + Q+V+K +    A V  ++GATILGDG V LILD
Sbjct: 1252 VLLIKGSSGQTVALLVDQLVGSRAQIVVKPVGQQLASVGAVAGATILGDGQVCLILD 1308



 Score = 36.2 bits (82), Expect = 1e-05
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 8   LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
           LR IF  E  E L  ++ +L         +  LN + R  H++KGGA       +    H
Sbjct: 515 LRDIFLEEAEELLAGMDSDLNSWTKESGQVTALNNLMRYLHTLKGGANMVQATHMGLIAH 574

Query: 68  AVETYLDLIRNQKKQLTAQGVDTLLKSCDVIRNMLDSREQETAI 111
            +E+    I N + Q     V T+L S  +IR + D   +   I
Sbjct: 575 ELESIYQRIINGQVQ-----VSTVLMS--IIRLVQDELAERIQI 611



 Score = 32.0 bits (71), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 8   LRKIFHVECRENLETLEGELLQLDPSQVDLEVLNTIFRAAHSIKGGAGTFNLHEISEFTH 67
           + ++F  E  E L+T    L Q    + +  +L  + R AHS+KGGA    L  ++   +
Sbjct: 690 VEEVFLEEAEELLQTAHNLLDQWVEERSNRSLLLQLQRNAHSLKGGARMAELEPVAVIAY 749

Query: 68  AVE 70
           A+E
Sbjct: 750 ALE 752