Pairwise Alignments

Query, 678 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 544 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Variovorax sp. SCN45

 Score =  322 bits (825), Expect = 3e-92
 Identities = 219/549 (39%), Positives = 303/549 (55%), Gaps = 39/549 (7%)

Query: 163 QIGRLASAVEGMTTNLMMAD------KEGIIQYLNPALLQLLTHREPELAQAFPGFKAAE 216
           Q+G++      + TN M A       K  + +Y    L  +L     E+A      KA +
Sbjct: 2   QLGKVHDMSTDLATNWMPATRSLLEMKNLMSRYRTQELQHILAGSYDEMAVYE---KAMD 58

Query: 217 LVGKNIDIFHKNPAHQRSIISNPERLPF----TSMIKVGSLEFNLTCIAMRDTKGEYIGP 272
               N+    KN A    +IS PE          ++   SLE N         + E    
Sbjct: 59  ETWANLQ---KNRAEYEKLISEPEEREIYPTLQKLLTEYSLEHNKIVAISHTQENEQATA 115

Query: 273 ALQWVDITEQRDGQRQVESLIQKAIKGDLHDRINTSGYNGFMR--ELGDGINNLLNTLV- 329
            ++   +   RD    ++ L +  + G +          G  R   LG  + ++   LV 
Sbjct: 116 LIRGKSLQLSRDINGALDKLTEVNVAGAIRAGETADTVYGEARLWVLGLLLGSVALGLVL 175

Query: 330 ---------EPLGQCITVMSRVAEGDLNTSMSEEYQGEFGRLASAVNASIVNLRNMVDKI 380
                     PL + + V   VA GDL + +      E G L  A+     +L  +V ++
Sbjct: 176 ALWIARIVSRPLSEAVKVAQSVAAGDLTSHIEARTTDETGLLLEALKGMNDSLAKIVGEV 235

Query: 381 TVSSARVATASTEIADGNNDLSQRVEAQASNLEETAASMEEITATVRQNADNAKDANLLA 440
            + +  +ATAS++IA GN DLS R E QAS+LE+TAASMEE+T+TV+QNADNA+ AN LA
Sbjct: 236 RIGTDTIATASSQIASGNQDLSSRTEEQASSLEQTAASMEELTSTVKQNADNARQANQLA 295

Query: 441 TDAAKKAARGGEVVGEAISAMGAINTASKKIADIISVIDEIAFQTNLLALNAAVEAARAG 500
             A++ A +GG VV + +  MG+IN +SKKI DII VID IAFQTN+LALNAAVEAARAG
Sbjct: 296 VSASEVAVKGGSVVSQVVDTMGSINASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAG 355

Query: 501 EQGRGFAVVAGEVRNLAQRSAGAAKEIKGLINDSVDKVNEGSRLVNESGSTLKEIVEAVV 560
           EQGRGFAVVA EVR+LAQRSA AAKEIK LI DSV+KV EGS+ V E+G T+ EIV +V 
Sbjct: 356 EQGRGFAVVASEVRSLAQRSAAAAKEIKTLIGDSVEKVEEGSKQVAEAGRTMDEIVGSVR 415

Query: 561 RVSDLIAQIAASSVEQSTGIDEINRAIAAMDEMTQQNASLVEETSAASQSLKDEGKELLN 620
           RV+D++ +I A+S EQ++GI++IN+AI  MD++TQQNA+LVEE SAA+QSL+++   L+ 
Sbjct: 416 RVTDIMGEITAASQEQTSGIEQINQAITQMDQVTQQNAALVEEASAAAQSLQEQAGSLVQ 475

Query: 621 LMNFF-------VTENNVTTFERKPRQSTPPKTKPVVSMHKAPINQAVHKMPA-RAAEEG 672
            ++ F        T  + T     PR +   K  P       P  +     PA + A  G
Sbjct: 476 SVSIFKLDANALATRASFTRLTPIPRAAAAVKPAPKRPAKALPARREPGSGPAPQLAMAG 535

Query: 673 D---EWEEF 678
           D   +W EF
Sbjct: 536 DAKGDWTEF 544