Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score = 98.6 bits (244), Expect = 4e-25
 Identities = 77/258 (29%), Positives = 126/258 (48%), Gaps = 28/258 (10%)

Query: 22  IFQFGQIWWLGLIA----ICIGLLPWLAGGAPQP---SIVTAQPTDDVRLSAE------- 67
           +F   +IW +G+I     + IGL   L      P   S+  AQ      L+ E       
Sbjct: 184 VFSQSRIWVIGMIVLTALVTIGLAVLLTRSIVLPLAQSLKVAQGVASGDLTGEISVCGRD 243

Query: 68  ----QQQALSLLEQVLKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVST 123
                QQAL  +++ L++ I+R++E   +        +    ++  GL + S+E    +T
Sbjct: 244 EPARLQQALKSMQENLRDTIRRISESSNQLASASEELSCVTEDATRGLHQQSQEIEQAAT 303

Query: 124 ----------QLVDNLMANQGSEFDLMQVLPKTEAIIQQFVQILVDVSEKSISAVHSIHD 173
                     ++  N +A   +  +  ++  +    +QQ V  +  ++      V  + D
Sbjct: 304 AVNQMTAAVEEVASNAVATSQASRESDRIAQRGREQVQQTVVSIEALATDVTDNVTQVED 363

Query: 174 MSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANL 233
           ++QK+  + K+L+ +RS++EQTNLLALNAAIEAARAG+AGRGFAVVA EVR L+ +    
Sbjct: 364 LAQKVYGISKVLDVIRSIAEQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAHRTQQS 423

Query: 234 NTQIETEMKVAQDTVDIA 251
             +IE  +   Q   D A
Sbjct: 424 TQEIEQMISGIQQGTDQA 441



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 241 MKVAQDTVDIANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQ 300
           +KVAQ     +    GE++     +    ++ +  M   ++     I +  N+L    ++
Sbjct: 222 LKVAQGVA--SGDLTGEISVCGRDEPARLQQALKSMQENLRDTIRRISESSNQLASASEE 279

Query: 301 LTQQVREGTRALQFTDIVYQQGEYALGSITFLQEASGLLKAVQSNSRNVQQLIENIEALQ 360
           L+    + TR L      +QQ +    + T + + +  ++ V SN+    Q     + + 
Sbjct: 280 LSCVTEDATRGL------HQQSQEIEQAATAVNQMTAAVEEVASNAVATSQASRESDRIA 333

Query: 361 ERSRNR 366
           +R R +
Sbjct: 334 QRGREQ 339