Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score = 83.6 bits (205), Expect = 1e-20
 Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 27/195 (13%)

Query: 149 IIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAAR 208
           +++Q +  + ++S+K   +   I  ++   D +  +L+ ++ +S+QTNLLALNAAIEAAR
Sbjct: 424 VVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQTNLLALNAAIEAAR 483

Query: 209 AGEAGRGFAVVAQEVRNL----------------SIQAANLN--TQIETEMKVAQDTVDI 250
           AGEAGRGFAVVA EVRNL                S+Q  +    T +      ++++V++
Sbjct: 484 AGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTMNASQTSSEESVEV 543

Query: 251 ANRTVGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQ----EVNKLQRLGQQLTQQVR 306
           AN+    + S  +TQ I   + ++  +    +  T + +    ++N++  L QQ    + 
Sbjct: 544 ANQAGERLVS--VTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQINLLNQQGVANLN 601

Query: 307 EGTRALQFTDIVYQQ 321
           E    L+  D + QQ
Sbjct: 602 E---TLKDCDALSQQ 613



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 46/207 (22%), Positives = 82/207 (39%), Gaps = 26/207 (12%)

Query: 152 QFVQ-ILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLLALNAAIEAARAG 210
           QFV+ I   +SE S SA   +HD+SQ++ M     + + S  +     ++ AAI      
Sbjct: 339 QFVERIHASISEVS-SATRQVHDLSQRV-MASSNASIIGSDEQSARTNSVAAAI-----N 391

Query: 211 EAGRGFAVVAQEVRNLSIQAANLNTQIETEMKVAQDTVDIANRTVGEMASFDMTQAIESK 270
           E G     +A+   + S  A+  + Q +   KV + T+ +A   + +  S   TQ IE+ 
Sbjct: 392 ELGAATQEIARNAADASQHASGASEQADDGRKVVEQTI-LAMSELSQKISLSCTQ-IETL 449

Query: 271 EKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLTQQVREGTRALQFTDIVYQQGEYALGSIT 330
                 +  +  +   I Q+ N L                AL       + GE   G   
Sbjct: 450 NASTDNIGHILDVIKGISQQTNLL----------------ALNAAIEAARAGEAGRGFAV 493

Query: 331 FLQEASGLLKAVQSNSRNVQQLIENIE 357
              E   L    Q ++  + ++I +++
Sbjct: 494 VADEVRNLAHRTQESAEEIHKMITSLQ 520