Pairwise Alignments

Query, 384 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 77/280 (27%), Positives = 142/280 (50%), Gaps = 26/280 (9%)

Query: 79  LKENIQRVAEPLEKQRLIINSSAETLNNSFFGLQRVSEEQSSVSTQLVDNLMANQGSEFD 138
           +++ I R+   +  Q+  I++S    + S   ++ V+E   + S  L   + +++ S+  
Sbjct: 260 VEQQIGRLEHNIHNQQSEISNSVAIGHQSQDSIKAVTESIYAASESLKQAVTSSEDSKAQ 319

Query: 139 LMQVLPKTEAIIQQFVQILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTNLL 198
           L +   + + ++++      +++ K+ +      +++ +++ V  +L  +RS++EQTNLL
Sbjct: 320 LREAQTQNQQLVEK-----AEITTKTAT------ELNTQVEKVTDILQMIRSIAEQTNLL 368

Query: 199 ALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMKVAQDTVDIANRTVGEM 258
           ALNAAIEAARAGE GRGFAVVA EVR+L+ + +    Q+ET   +       +   +G M
Sbjct: 369 ALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVET---LLTQLSGYSRNLIGYM 425

Query: 259 -----ASFDMTQAIES-KEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQLTQQVREGTRAL 312
                A+ +   AIES    VD  +  V Q N+  +  V+  ++   +L +Q+ E  R L
Sbjct: 426 EESLVAARNCVAAIESGSNLVDKAIIDVNQANSTNQNAVHDSEQ-QNRLVEQLLEQLRLL 484

Query: 313 QFTDIVYQQGEYALGSITFLQEASGLLKAVQSNSRNVQQL 352
                     E    S T  + +  LL++      N++QL
Sbjct: 485 D-----NHARELLTDSATISEHSKELLRSASQTRSNLKQL 519



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 55/276 (19%), Positives = 108/276 (39%), Gaps = 34/276 (12%)

Query: 138 DLMQVLPKTEAIIQQFVQILVDVSEKSISAV----HSIHDMSQKL-----------DMVF 182
           D +  +  T A I+  +  + DVS K    +    H+IH+   ++           D + 
Sbjct: 234 DFIAKVESTFAPIKDRIVEVTDVSHKVEQQIGRLEHNIHNQQSEISNSVAIGHQSQDSIK 293

Query: 183 KLLNQVRSLSEQTNLLALNAAIEAARAGEAGRGFAVVAQEVRNLSIQAANLNTQIETEMK 242
            +   + + SE       ++    A+  EA      + ++    +  A  LNTQ+E    
Sbjct: 294 AVTESIYAASESLKQAVTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQVEKVTD 353

Query: 243 VAQDTVDIANRT--VGEMASFDMTQAIESKEKVDYMLRGVQQLNTEIEQEVNKLQRLGQQ 300
           + Q    IA +T  +   A+ +  +A E+      +   V+ L  +     N+++ L  Q
Sbjct: 354 ILQMIRSIAEQTNLLALNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQ 413

Query: 301 LTQQVREGTRALQFTDIVYQQGEYALGSITFLQEASGLLKAVQSNSRN------------ 348
           L+   R     ++ + +  +    A+ S + L +   ++   Q+NS N            
Sbjct: 414 LSGYSRNLIGYMEESLVAARNCVAAIESGSNLVD-KAIIDVNQANSTNQNAVHDSEQQNR 472

Query: 349 -VQQLIENIEALQERSRNRGGLAANQHSIDEGEVEL 383
            V+QL+E +  L   +R    L  +  +I E   EL
Sbjct: 473 LVEQLLEQLRLLDNHARE---LLTDSATISEHSKEL 505



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 41/211 (19%), Positives = 83/211 (39%), Gaps = 37/211 (17%)

Query: 54  VTAQPTDDVRLSAEQQQALSLLEQV---------LKENIQRVAEPLEKQRLIINSSAETL 104
           VT+      +L   Q Q   L+E+          L   +++V + L+  R I   +    
Sbjct: 310 VTSSEDSKAQLREAQTQNQQLVEKAEITTKTATELNTQVEKVTDILQMIRSIAEQTNLLA 369

Query: 105 NNSFFGLQRVSE----------------EQSSVSTQLVDNLMAN-QGSEFDLMQVLPKTE 147
            N+     R  E                E++S ST  V+ L+    G   +L+  + ++ 
Sbjct: 370 LNAAIEAARAGENGRGFAVVADEVRHLAEKTSASTNQVETLLTQLSGYSRNLIGYMEESL 429

Query: 148 AIIQQFV-----------QILVDVSEKSISAVHSIHDMSQKLDMVFKLLNQVRSLSEQTN 196
              +  V           + ++DV++ + +  +++HD  Q+  +V +LL Q+R L     
Sbjct: 430 VAARNCVAAIESGSNLVDKAIIDVNQANSTNQNAVHDSEQQNRLVEQLLEQLRLLDNHAR 489

Query: 197 LLALNAAIEAARAGEAGRGFAVVAQEVRNLS 227
            L  ++A  +  + E  R  +     ++ LS
Sbjct: 490 ELLTDSATISEHSKELLRSASQTRSNLKQLS 520