Pairwise Alignments

Query, 568 a.a., two-component system sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  259 bits (661), Expect = 3e-73
 Identities = 162/563 (28%), Positives = 289/563 (51%), Gaps = 12/563 (2%)

Query: 1   MRVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILPDVILLDVMMPIKD 60
           + ++I +D   +  L   I+      + T  +G +A+D        P ++L+D +MP+ D
Sbjct: 11  LTILIAEDSAADLLLLSTIVRRQGHQVLTATNGAEAVDVFSRER--PQLVLMDALMPVMD 68

Query: 61  GFVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCL-ALGDDFILKPVERSVLIAKVQAHY 119
           GF  A+ I+Q   +  +P+IFLT L + ++  +CL A GDDF+ KP  + +L AK+ A  
Sbjct: 69  GFEAARRIKQLAGEELVPLIFLTSLRESEALAQCLDAGGDDFLPKPYNQLILAAKINAMD 128

Query: 120 RIVKMHNEVMEQRDELRHFREQVQYDYAISESIFTNLMEEMCHQVEHIFGIHYISTPSTI 179
           R+ ++   V++QRD +    + + ++  +++++F  +    C  +     I Y+ +P  +
Sbjct: 129 RLRRLQATVLQQRDLIAKHHDYLLHEQRVAKAVFDKVAHSGC--INAAPNIRYLQSPYAL 186

Query: 180 FNGDLIVVANRPHGGVYVMIADATGHGLPAAISTIPATRTFFSTAQKGLSLGEMVIELNH 239
           FNGDL++ A  P G ++V++ D TGHGLPAA+  +P    F+    KG  L + + E+N 
Sbjct: 187 FNGDLLLAAYTPSGDMHVLLGDFTGHGLPAAVGAMPLAEVFYGMTAKGYGLAQTLREMNA 246

Query: 240 SLERFLPVGMMLAASVFEVRANGFEISWWGGGLPEAYLLDHHGNIVSRLISNHMPLGVLP 299
            L+R LPV M   A++  +      +  W GG+PE Y  +      + L S H+PLGVL 
Sbjct: 247 KLKRILPVDMFCCATLLCLSTQRRVVEVWNGGMPEGYRHEIATGRRTPLESRHLPLGVLS 306

Query: 300 SNEFEADVQHFKLEPNQKLVCYTDGIIEAMNEQGEYFGQERLEHVL-TKAYSEALIPTLY 358
           +  F+   + + +    ++   +DG+++  +   + FG ERL+ V       + L   + 
Sbjct: 307 AQAFDDRTEVWPMALGDRVFLLSDGVLDTADANDQLFGAERLQQVFAANREPDRLFEDIE 366

Query: 359 DAVKKFSNRGKGDDLSILTMTF-PITNSNSSDKALPKVVLSC-IPLQTELHFPADVLRKI 416
            A+  F    + DD+S++ +T  P     ++         SC +       F A+ L++ 
Sbjct: 367 QALAAFRGEVR-DDVSMVEITLQPDQQLRATGPLYADSGQSCPLDWSVSFEFRAETLKRY 425

Query: 417 SLMNEVRRFLTGIVSGGEDLDLLCSVLSELFANAIEHGLLELDSSLKETPDGFFEFYQLR 476
           + +  + + L  I    E    L SV++EL++NA+EHG+L LDS LK    GF E+Y+ R
Sbjct: 426 NPLPYLLQLLLEIHGLREQSGALYSVMAELYSNALEHGVLGLDSRLKRDAQGFAEYYRQR 485

Query: 477 DKRLKTLPE-YHWLILKVNYQPDKQRIEIDLEHSGKGFDCQAL--KDASNQKSYGRGILL 533
           + RL  L   Y  + ++V       ++ + +E SG GFD + +  +     +  GRG+ L
Sbjct: 486 NDRLAQLNSGYIRVHVQVVPIGAGGKMTLRIEDSGSGFDVEQVLARPLDIDRLSGRGLSL 545

Query: 534 ATQLCESLEYSNQGRRVTAVYSF 556
             QL   + +S+ GR V   +S+
Sbjct: 546 VRQLSSEVGWSDGGRSVCVEFSW 568