Pairwise Alignments

Query, 568 a.a., two-component system sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 63.9 bits (154), Expect = 5e-14
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 2    RVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILPDVILLDVMMPIKDG 61
            R+++V+D+  N+++   +L      +D  +DG  A+  +R      D++L+D+ MP+ DG
Sbjct: 1280 RILLVEDNDLNQQVATELLGDAGFQVDVADDGAIALAKVRRNAY--DMVLMDMQMPVMDG 1337

Query: 62   FVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCLALG-DDFILKPVERSVLIA 113
                +EIR+     H+PI+ +T    +   ++CL  G +DFI KP++   L A
Sbjct: 1338 VAATREIRRLGQFDHLPIVAMTANAMQRDRDRCLDAGMNDFITKPIDPDQLWA 1390



 Score = 43.1 bits (100), Expect = 9e-08
 Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 2    RVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILP---DVILLDVMMPI 58
            RV++VDD+   R +   ++A +   + T   G +A+D ++   +     +++LLD  MP 
Sbjct: 1131 RVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMPG 1190

Query: 59   KDGFVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCLALG-DDFILKPVERSVL 111
             DG  TA  +    +     ++ +T     +        G +D ++KPV  S+L
Sbjct: 1191 MDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASIL 1244