Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Type I secretion system ATP-binding protein PrsD from Xanthobacter sp. DMC5

 Score =  226 bits (575), Expect = 3e-63
 Identities = 146/544 (26%), Positives = 272/544 (50%), Gaps = 8/544 (1%)

Query: 157 VLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFI 216
           V++ S  INL  + A ++   VYD+V+ + + ETL +L+     ++L     + LRS  +
Sbjct: 32  VVVFSFFINLLGLNASIYMMQVYDRVLGSRSIETLVLLTIITAFLYLVWAALEGLRSRLL 91

Query: 217 DVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFFTSATISSLIDLP 276
           + AG   D   ++ +F  V   RM  R P  G  A+ L++ +++R+F+  A +++L D+P
Sbjct: 92  ERAGIAFDTKAAADVFDAVR--RMALRAPGNGQ-AQALRDLDTVRDFYAGAGLAALCDVP 148

Query: 277 FALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANLIESL 336
           +  ++++   L+  +   + V   L     + L     ++++ E  R   +  A    +L
Sbjct: 149 WVPIYMICATLLHPYYGVLAVASCLFSGFLAVLNNRATRQSLAEAGRAGIKASAIATATL 208

Query: 337 AGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVGV 396
              E +K  G     + RW  A      W  ++      +     F +      ++ +G 
Sbjct: 209 RNAEVLKAMGMSQALRARWNAAHEDAMGWQSRAGDRGALLIGITKFNRALVQSIVLGLGA 268

Query: 397 YLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEG 456
           +L     ++ G +IA ++L GR I P+ Q     + +    +  T   ++  +       
Sbjct: 269 WLAIQKQISPGMIIAGSILVGRCIQPIEQAV---SNWKSVVNMRTAYGRIQLLLRAAPPP 325

Query: 457 KRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLI 516
              +  P   G + ++ +    P   +A +R LS  +  G  + +IG   +GK+TL R +
Sbjct: 326 PERLRLPDPTGTVSVENLFVRAPGREVAVLRQLSFRLDAGSVLGVIGPTAAGKSTLARAL 385

Query: 517 MGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREV 576
           +G+++   G VR+D +D++      + R++G +PQD  LF G+I +NI      ++   V
Sbjct: 386 VGVWQAASGAVRLDGSDLAHWDEEQLGRHVGYLPQDVELFAGTIAENIARFTA-AEPEAV 444

Query: 577 MDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSA 636
           + AA  AGV    QQ P G   ++G+GG+ LSGGQRQ + +ARA  G P ++++DEP ++
Sbjct: 445 VAAAQLAGVHEMIQQLPQGYNTEIGDGGLALSGGQRQRIGLARAVFGLPALIVLDEPNAS 504

Query: 637 MDNRSEMHIKQQLSQLKPS-ETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEVLNDL 695
           +D   E  + + L QLK +  T++LITH+ + L   D V+ ++ G  +A GP+ EV+  +
Sbjct: 505 LDPAGEAALTEALKQLKAARRTVVLITHRPAALAQCDLVLALKDGAALAFGPRDEVMKRV 564

Query: 696 RQGN 699
            QG+
Sbjct: 565 AQGS 568