Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 705 a.a., Type I secretion system ATPase, LssB family LapB from Variovorax sp. SCN45

 Score =  442 bits (1136), Expect = e-128
 Identities = 243/698 (34%), Positives = 404/698 (57%), Gaps = 8/698 (1%)

Query: 6   LNSLVYVSRYYGLANSPEALINGLPLADGKLTPFLFPRSAERAGLIAKENRAPLDQIPHL 65
           L+++++V+R+YG+  S E++   L    G     L    A + GL  +        +   
Sbjct: 11  LDAMLFVARHYGIGASEESVRVSLAWERGAPLDTLLDHMARQLGLTVRLGEFSDAMLDPW 70

Query: 66  VFPVVLLLKGGEACVLNSINQETQEAEIVTAESGLVPVAYSLSDLEAMYIGRYFMVKKQF 125
             P+V+    GE  V+ + +   Q   ++  + GL   A  L++L  ++  R  +++   
Sbjct: 71  RLPLVVEFDNGEVGVVRASDGHGQLGVLLGGDHGL-ETALPLAELR-LHAKRVAVLRPNT 128

Query: 126 RF-DERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVP 184
              D R  + +KP   +WFW+   +    Y D+++AS+  N+ A+A+ +FS  +YD+VVP
Sbjct: 129 AVPDARVDDYIKPYKANWFWAIALRDWRRYGDIVLASMFANVLALASMIFSMQIYDRVVP 188

Query: 185 NLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARP 244
             +  TLWVL  G+++  +F+F+ ++ R++  DV GK++D+ +S  +F   + +R +AR 
Sbjct: 189 AQSEPTLWVLFGGVMLAVVFEFMLRVSRTHISDVIGKRADLKVSDVVFGHALRLRTDARS 248

Query: 245 PSVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILV 304
            S G+F   ++E E +RE  TS TIS++ DLPF LLFLV++WL+AG L  V +  V +LV
Sbjct: 249 KSTGSFIAQVREVEQVRELLTSTTISAVADLPFFLLFLVVLWLVAGPLALVALAAVPLLV 308

Query: 305 IYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMAN 364
           I   LIQ  L R   EG R ++ + A L+E++ G+E +KL  A+ +FQ +W       A 
Sbjct: 309 IPGLLIQKPLARLASEGMRESALRNALLVEAVEGIEDIKLMRAEPRFQNQWNHVNDVSAG 368

Query: 365 WNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLV 424
            +++ R +T  +      VQ      +++ G +L+  GD+T G L+ +++L+ R I PL 
Sbjct: 369 VSMRQRFLTSLLMTWTQEVQTIVYAVVLLAGCFLVMRGDMTTGALVGSSILASRMISPLA 428

Query: 425 QLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHY---PNS 481
           QLS +  R+ QAK +   ++Q+M  P +Q +G R +H P + G   L  V F Y     S
Sbjct: 429 QLSGVFARWQQAKVARAGLDQLMQRPVDQADGARLVHAPALHGNYALAGVEFRYGKEDKS 488

Query: 482 PIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHID 541
           P  ++  L   I  G+KVA++GR+GSGK+TL +L+ GL  P +GHV +D  D+S +   D
Sbjct: 489 PALTIAQLQ--IQAGDKVALLGRMGSGKSTLLQLLAGLQSPQQGHVALDALDLSLIDPAD 546

Query: 542 IRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVG 601
           +RR++G + Q++ LF+GSIR+N+T+G PL+ D +V +A   AG   F Q    GL+  + 
Sbjct: 547 LRRDMGLLTQNARLFHGSIRENVTMGMPLATDDQVFEAVAMAGALSFLQSRAEGLDELIH 606

Query: 602 EGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILI 661
           EGG+ LSGGQRQ++ +AR  + +P ++L+DEPT+  D  +E H+   +       TL++ 
Sbjct: 607 EGGLGLSGGQRQALLLARTLIRQPSIVLLDEPTAHFDEVTERHVIDSMGAWLGPRTLVVA 666

Query: 662 THKTSMLDVVDRVIVMEKGCIIADGPKHEVLNDLRQGN 699
           TH+  +L  VDR++V++ G I+ DG K +VL  L  GN
Sbjct: 667 THRMPVLQWVDRIVVIDGGRIVMDGSKDQVLGRLSHGN 704