Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 708 a.a., Type I secretion system ATPase, LssB family LapB from Variovorax sp. SCN45

 Score =  431 bits (1107), Expect = e-125
 Identities = 236/698 (33%), Positives = 403/698 (57%), Gaps = 8/698 (1%)

Query: 6   LNSLVYVSRYYGLANSPEALINGLPLADGKLTPFLFPRSAERAGLIAKENRAPLDQIPHL 65
           L+++V+V+R+YG+  S E+    L    G     L    A + GL  + +     Q+   
Sbjct: 14  LDAMVFVARHYGIGASEESARVTLAWERGAPLDTLLDHMARQLGLSLRLDAFSDAQLDPW 73

Query: 66  VFPVVLLLKGGEACVLNSINQETQEAEIVTAESGLVPVAYSLSDLEAMYIGRYFMVKKQF 125
             P+ +    GE  V+ + + + +   ++  + GL   A +  +L    + R  +++ Q 
Sbjct: 74  RLPLAVEFDDGEVGVVRTSDGKGRLGVLLGGDHGL-ETAVAADELRRR-VRRVAILRPQT 131

Query: 126 RF-DERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVP 184
              D R  + ++P   +WFWS   +    Y D+++AS+  N+ A+++ +FS  +YD+VVP
Sbjct: 132 SVPDARVDDYIRPYQANWFWSIALRDWRRYGDIVLASVFANVLALSSMVFSMQIYDRVVP 191

Query: 185 NLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARP 244
             +  TLWVL  G+++   F+F+ +M R++  DV GK++D+ +S  +F   + +R +AR 
Sbjct: 192 AQSESTLWVLFGGVMLAVAFEFLLRMSRTHISDVIGKRADLKVSDLVFGHALRVRNDARS 251

Query: 245 PSVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILV 304
            S G+F   ++E E +RE  TS TI ++ DLPF LLF+V++W++AG L WV +  V +LV
Sbjct: 252 RSTGSFIAQVREVEQVRELLTSTTIGAVADLPFFLLFVVVLWMVAGPLAWVALAAVPLLV 311

Query: 305 IYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMAN 364
           I   L+Q  L R   EG R ++ + A L+E++ G+E +KL  A+ +FQ +W  A    A+
Sbjct: 312 IPGLLVQKPLARLANEGMRESALRNALLVEAVEGIEDIKLMRAEPRFQNQWNHANDVAAS 371

Query: 365 WNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLV 424
            +++ R +T  +      VQ      +++ G +L+  G++T G L+ +++L+ R I PL 
Sbjct: 372 VSMRQRFLTGLLMTWTQEVQGIVYAVVLLAGCFLVMKGEMTTGALVGSSILASRMISPLA 431

Query: 425 QLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHY---PNS 481
           QLS +  R+ QAK + T ++Q+M  P +Q E  R +H P + G   L    F Y     +
Sbjct: 432 QLSGVFARWQQAKVARTGLDQLMQRPVDQPEHARRVHVPALHGNYALTNAEFRYGKDDKA 491

Query: 482 PIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHID 541
           P  SV  L   +  GEKVA++GR+G+GK+TL +L+ GL+ P  GHV +D  D+  +   D
Sbjct: 492 PALSVAQLQ--VKAGEKVALLGRMGAGKSTLLQLMAGLHAPQRGHVSLDALDLRLIDPAD 549

Query: 542 IRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVG 601
           +RR++G + Q++ LF+GSIR+N+TLG P++ D +V++A   AG   F      GL+  + 
Sbjct: 550 LRRDMGLLTQNARLFHGSIRENVTLGMPMATDTQVLEAIAMAGALPFVHSRAEGLDDLIH 609

Query: 602 EGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILI 661
           EGG+ LSGGQRQ++ +AR  + +P ++L+DEPT+  D  +E  +   + +     TL++ 
Sbjct: 610 EGGLGLSGGQRQALLLARTLIRQPSIVLLDEPTAHFDEVTERQVIDAVGRWLAPRTLVVA 669

Query: 662 THKTSMLDVVDRVIVMEKGCIIADGPKHEVLNDLRQGN 699
           TH+  +L  VDR++V+E G I+ DG K ++L  L  G+
Sbjct: 670 THRMPVLQWVDRIVVLEGGRIVMDGSKDQILGKLANGH 707