Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., Efflux ABC transporter, permease/ATP-binding protein from Sphingobium sp. HT1-2

 Score =  206 bits (523), Expect = 3e-57
 Identities = 154/553 (27%), Positives = 274/553 (49%), Gaps = 15/553 (2%)

Query: 142 WFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVI 201
           W ++T Y ++      L A ++ +   +A P   R+V DK        + W     +LV+
Sbjct: 3   WRFATRYPAR--IAGALTALIVSSAATLAIPSGFRLVIDKGFTGGGDISRWFEYLFLLVV 60

Query: 202 FLFDFVFKMLRSYFIDVAGKK--SDILISSK--LFSKVMGIRMEARPPSVGAFARHLQEF 257
            L   +   LR YF+   G++  +DI  +++  L  +      E RP  + +  R   + 
Sbjct: 61  ILA--LASALRFYFVSWLGERVVADIRSATQANLLRQAPAFFEENRPSEIAS--RMTADT 116

Query: 258 ESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRA 317
             I +   S    +L +L   +  L+ ++++A  L  + ++G+ ++V+    +  R+++ 
Sbjct: 117 AIIDQVVGSTVSVALRNLVTGIGGLIYLFVLAPKLAGLLILGIPVIVLTLVTLGRRVRKL 176

Query: 318 IEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQ 377
                   ++  +   E L  ++ V+ FG +G+   R++  VA+      + R +  ++ 
Sbjct: 177 SRASQDRLAEVGSVTTEVLGAMKIVQGFGQEGREAARFDATVAN-GFATARQRILLRAVM 235

Query: 378 NTAGFVQQAANI-GMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQA 436
               F     +I G++ +G   ++ G L+ G + A  +  G   G    LS       + 
Sbjct: 236 TAIAFALVFGSITGVLWLGAIDVAAGRLSGGSIAAFVLTGGLVAGAFGSLSESWGDLLRG 295

Query: 437 KSSMTIIEQVMSMPDEQEEGKRYIHRPII-QG-KIELDRVTFHYPNSPI-ASVRDLSLTI 493
             + + ++++M+           +  P + QG ++  D V FHYP  P  A++  +++ I
Sbjct: 296 AGAASRLDELMAAEPAIAAPAAPVAIPTLPQGARLRFDNVHFHYPTRPDQAALNGVTIDI 355

Query: 494 HPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDS 553
            PGE VA++G  G+GK+TL +L +  Y P +G V+++D  +       +R  +  VPQDS
Sbjct: 356 APGETVAVVGPSGAGKSTLIQLALRFYDPDQGEVQLNDVPLPAADPAALRAAMAMVPQDS 415

Query: 554 VLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQ 613
           V+F  S RDN+  G+  + D E+  AA  A    F +  P GL+  +GEGG  LSGGQRQ
Sbjct: 416 VIFAASARDNLRYGKWDASDEEIWAAARAANAEAFLRALPQGLDSHLGEGGARLSGGQRQ 475

Query: 614 SVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDR 673
            VSIARA L   P+LL+DE TSA+D  SE  +K  L +L    T I+I H+ + +   DR
Sbjct: 476 RVSIARALLRDAPILLLDEATSALDAESEQLVKDALDRLMQGRTTIVIAHRLATVRAADR 535

Query: 674 VIVMEKGCIIADG 686
           +IV+++G I+  G
Sbjct: 536 IIVLDQGRIVEQG 548