Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., Protein secretion ABC efflux system, permease and ATP-binding protein from Pseudomonas putida KT2440

 Score =  407 bits (1046), Expect = e-117
 Identities = 229/692 (33%), Positives = 391/692 (56%), Gaps = 4/692 (0%)

Query: 6   LNSLVYVSRYYGLANSPEALINGLPLADGKLTPFLFPRSAERAGLIAKENRAPLDQIPHL 65
           L  ++ V+ +Y L  SP+  I      D +    +    A +AGL  +        +   
Sbjct: 30  LEVMLQVAHHYRLDVSPQR-IRLAAAEDARPLNEILRHMARQAGLALRFVHFDAKGLRQW 88

Query: 66  VFPVVLLLKGGEACVLNSINQETQEAEIVTAESGLVPVAYSLSDLEAMYIGRYFMVKKQF 125
             P+VL L  G+  V+ S+ +E   A +   + GL   +    D     I R  +++   
Sbjct: 89  RTPLVLELDDGQLAVVESVTEEDDLAVVFAGDQGLT--SRLPRDTLKGRISRVALLRPAR 146

Query: 126 RF-DERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVP 184
              D R+ +   P D HWF   + +    Y  V+IASL+ N+ A+A  +FS  VYD+V+P
Sbjct: 147 PLRDVRTDDYTAPYDRHWFARIVLRDLRPYGQVMIASLVANVLALAGVLFSMQVYDRVIP 206

Query: 185 NLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARP 244
             +  TL+VL  G+++  +FDF  ++LR    D+ GK++D+ +S  ++   + +R   RP
Sbjct: 207 AESLPTLYVLFGGVVLALVFDFSMRLLRLKVTDLLGKRADLRVSDLVYGHALRLRNSVRP 266

Query: 245 PSVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILV 304
            S G+F   L+E ESIR+  TS+T + L DLPF LLFL + WL+ G LV++P++ +L +V
Sbjct: 267 KSTGSFISQLRELESIRDLITSSTATVLADLPFFLLFLFVFWLIGGVLVFIPLVALLAMV 326

Query: 305 IYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMAN 364
           +   L Q RL R      R ++ + A L+ES+ GL+ +K   A+ +F+ +W +  A  A+
Sbjct: 327 LPGLLAQRRLARLANASMRESALRNAMLVESIQGLDEIKALQAEARFERQWNQYNAACAH 386

Query: 365 WNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLV 424
            N++ R +T+ +      VQ A    +I++G  ++  GDLT G L+AA+MLS R + PL 
Sbjct: 387 TNLRLRTLTNGLVTWTQNVQGAVFAVVIVIGAPMVIAGDLTTGSLVAASMLSSRMMAPLA 446

Query: 425 QLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIA 484
           QL+ + TR+ QAK ++  ++++M  P +  EG+  +H P I G+  L +  F Y      
Sbjct: 447 QLTHVLTRWQQAKVALQGLDKLMQSPVDHPEGEARVHLPAIHGEYRLRQANFRYSEDYPP 506

Query: 485 SVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRR 544
            +    L I PGE++A++GR G+GK+TL + + G     +G + +D   ++ L   D+RR
Sbjct: 507 VLNIGRLDIQPGERIAVLGRNGAGKSTLLQALGGAMDLVQGEISLDGIAMAHLDPADLRR 566

Query: 545 NIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGG 604
           ++G +PQ + LF+G++R+N+TLG   + D+E++ A    G   F ++ P G++  + EGG
Sbjct: 567 DVGLLPQYARLFHGTLRENLTLGAGQASDQELVAALAATGALDFVRRLPKGMDHLILEGG 626

Query: 605 MLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILITHK 664
           + LSGGQRQ++ ++R  + +P VLL+DEPT+++D+ +E  +   L +     TL++ TH+
Sbjct: 627 LGLSGGQRQALVLSRLLVRQPQVLLLDEPTASLDDMTERKLLDNLERFCQGRTLVIATHR 686

Query: 665 TSMLDVVDRVIVMEKGCIIADGPKHEVLNDLR 696
            S+L  VDR++V++ G I+ D  +   L  L+
Sbjct: 687 LSVLQRVDRILVLDAGRIVIDDARDAALAKLQ 718