Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Lipid A export ATP-binding/permease protein MsbA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  230 bits (587), Expect = 2e-64
 Identities = 165/586 (28%), Positives = 291/586 (49%), Gaps = 34/586 (5%)

Query: 129 ERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLINLFAVAA----PMFSRIVYDKVVP 184
           E + E  +P    W    +++    YR  L++  L+ L + AA    P  +  + D+V+ 
Sbjct: 81  ECAQEAPQPPPSTWVLLRLWRFARPYRWTLLSGFLLTLASTAATLVPPYLTIPLMDRVL- 139

Query: 185 NLAFETLWVLSSGILVIFLFDFVFKML--------RSYFIDVAGKKSDILISSKLFSKVM 236
            + F+    + +G+++  L   +   L        R++ + +  ++    + +  F  ++
Sbjct: 140 -IPFQNGQAIDTGLVLALLGGLLGSALLAWSLGWARTWLLALVSERISSDLRTTTFDHLL 198

Query: 237 GIRME--ARPPSVGAFARHLQEFESIREFFTSATISSLID-----LPFALLFLVLIWLMA 289
            + ++  +   +    AR   E + I  F +   +  L D     +   +LF +  WL  
Sbjct: 199 ELSLDYFSSKRTGDLMARIGSETDRISVFLSLHALDFLTDVLMIGMTAVILFSINPWLAL 258

Query: 290 GHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQG 349
             LV +P IG +I      L++ RL+   E+  R+  +    L +++ G+  VK F  + 
Sbjct: 259 ATLVPLPFIGWMI-----HLVRDRLRTGFEKIDRVWGEVTNVLADTIPGIRVVKAFAQEA 313

Query: 350 QFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIV---GVYLISNGDLTM 406
           +   R+  A  H    N +  +       T   + +   IG+++V   G++L+S  ++T+
Sbjct: 314 REARRFRRANEHNLAVNDRINKTWSLFTPTVTLLTE---IGLLVVWAFGIWLVSQSEITV 370

Query: 407 GGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQ 466
           G L A     GR  G L  +S + +   +A S    I  ++       E  + +    +Q
Sbjct: 371 GVLTAFIAYIGRFYGRLDSMSRIVSVTQKAASGAKRIFDILDHVSNVPEPTQPVPLTRVQ 430

Query: 467 GKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGH 526
           G ++++ V+F Y +  +  +R+LSL I PGE + ++G  GSGK+TL  L+   Y  +EG 
Sbjct: 431 GGLQMENVSFRYGSRTV--IRNLSLDIRPGEMIGLVGHSGSGKSTLVNLLCRFYDVSEGG 488

Query: 527 VRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVT 586
           +RID TDI ++   D RR+IG V Q+  LF+G+I +NI  GRP +   E++ AA  A   
Sbjct: 489 IRIDGTDIRRVGVADFRRHIGLVLQEPFLFFGTIAENIAYGRPGATRTEIVAAARAAHAH 548

Query: 587 VFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIK 646
            F  + P G +  VGE G  LSGG+RQ +SIARA L  P +L++DE TS++D  +E  I+
Sbjct: 549 EFILRLPQGYDSLVGERGQGLSGGERQRISIARALLIDPRILILDEATSSVDTETEKEIQ 608

Query: 647 QQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEVL 692
           + L  L    T I I H+ S L   DR++VM++G ++  GP  E++
Sbjct: 609 KALDNLVQGRTTIAIAHRLSTLRKADRLVVMDRGQVVEIGPHDELM 654