Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., Putative type-1 secretion protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  206 bits (523), Expect = 4e-57
 Identities = 136/543 (25%), Positives = 263/543 (48%), Gaps = 9/543 (1%)

Query: 145 STIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLF 204
           +++  +K  Y     +SL + +FA+  P+FS + YDK+VP+ +  +L+ ++  + V  +F
Sbjct: 145 NSLSMNKIFYTKYFFSSLFMAIFALTIPVFSNLFYDKLVPSASVSSLFGVAIIVAVFIVF 204

Query: 205 DFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFF 264
           +F+ +  +  +  +  ++ D+ I       V+  + +       AF     EF+ I+   
Sbjct: 205 EFILRTSKDIYQSITARQDDVDIDIAFLEAVLYSKKKNGRSMSSAFVLW-NEFQKIKPVL 263

Query: 265 TSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRL 324
            ++    + D+P  ++FL++I++  G +V VP+   ++ +I S +        + +    
Sbjct: 264 LNSIFQRIADIPIFIIFLIVIYVNLGLVVIVPITMFIVSIIISLVNHHYTNELMNKQKEG 323

Query: 325 ASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQ 384
              +   + E    ++ +     QG   + W       +  N+K R++    Q+  G + 
Sbjct: 324 QKNRNIFISEVFLSIKMIHTLNNQGLL-FDWVNTSNEQSYLNLKIRKLNLIYQSILGSMS 382

Query: 385 QAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIE 444
               I ++++  +++  GD+T G ++++ ++SGR  G +   S  ST  +   +  T  +
Sbjct: 383 SITQITIMVIAFFMVIKGDVTTGAIVSSVIVSGRISGIISNFS--STLISILSAEKTG-K 439

Query: 445 QVMSMPDEQEEGKRYIHRPIIQ--GKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAII 502
            ++S  DE +  K    + I +  G I +  V++ Y       +  LS+ I  G++VA++
Sbjct: 440 DLLSFFDEDQAEKTPALQSISKCNGDISIRGVSYQYDAQSPMIINRLSIDIPAGQRVAVV 499

Query: 503 GRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRD 562
           G  G+GK++L  ++ G   PT+G +  D  ++  L      +++  V    VLF G+I  
Sbjct: 500 GECGAGKSSLLGMLSGYLSPTDGAILYDGYNLGHLSQNFFSQHLSVVTTHDVLFTGTIES 559

Query: 563 NITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFL 622
           N  L +P +D   V+ A   A    F  Q P GL+  V      LS GQ+Q + +AR+  
Sbjct: 560 NFAL-KPQNDRGRVLKALQLANCG-FILQHPMGLKFPVNFMAKNLSSGQQQQLLLARSLS 617

Query: 623 GRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCI 682
               V L DEPTS +D  +E  I   L +    +TLI++TH+  ++   DRV+VM+ G I
Sbjct: 618 SDASVFLWDEPTSNLDENTEKQIFDNLDEFIHGKTLIMVTHRRYLIKYFDRVLVMKGGKI 677

Query: 683 IAD 685
           I D
Sbjct: 678 IRD 680