Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., Lipid A export ATP-binding/permease protein MsbA from Alteromonas macleodii MIT1002

 Score =  213 bits (542), Expect = 2e-59
 Identities = 155/541 (28%), Positives = 279/541 (51%), Gaps = 19/541 (3%)

Query: 163 LINLFAVAAPMFSRI--VYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAG 220
           +I   AV   +FS++  + D+ +     + L + +  I+ +FL   VF  L SY +   G
Sbjct: 32  MIGYSAVDTFVFSQLQPMIDESLGKNDHDYLRLAAYAIVPLFLLRGVFNFLGSYTLSWIG 91

Query: 221 KKSDILISSKLFSKVMGIRMEARPPSV--GAFARHLQEFESIREFFTSATISSLID--LP 276
            +  + +  +LF K + + +         G  ++   + E +      A ++ + +  L 
Sbjct: 92  AQVVMRMRQQLFEKYIHLPVAFHDNHAVGGLISKVTYDTEQVANASGKALLTLVREGALV 151

Query: 277 FALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANLIE-S 335
             LL ++  +     L+++ +IG ++ VI S  + S+  R + +  + +     + +E +
Sbjct: 152 IGLLCVMFYYSWQLSLIFL-LIGPIVAVIVS--VVSKRFRVVSKNIQQSMGNLTSSVEQA 208

Query: 336 LAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVG 395
           + G + V +FG Q   Q R+E+   H    ++K      SI + +  +Q  A+I + +V 
Sbjct: 209 VKGHKVVIMFGGQEIEQKRFEQKNNHNRQQSMKLN--VTSILSVSS-IQVIASIALAVVL 265

Query: 396 VYLISNG---DLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMPDE 452
               + G    LT G  I         + PL QL+ ++ ++ +  ++   I +++   DE
Sbjct: 266 FIASTPGMLEKLTAGVFINVVFCMVMLLKPLKQLTTINNQFQKGMAACASIFEILDEADE 325

Query: 453 QEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTL 512
           +++GK  + R    GKIE D VTF YP     ++ ++S   +PG+ +A++GR GSGK+T+
Sbjct: 326 EDKGKTKVERAT--GKIEFDDVTFSYPGKQTPALSNVSFIANPGQSIALVGRSGSGKSTI 383

Query: 513 ERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLG-RPLS 571
             L+   Y P EG +R+DDT ++ +   D+R     V Q+  LF  +I +NI  G R   
Sbjct: 384 SSLLTRFYVPQEGEIRLDDTALNDIDLKDLRAQFAVVSQNVTLFNDTIANNIAYGARQNV 443

Query: 572 DDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMD 631
             +++ +AA  A V  F    P GL+  +GE G++LSGGQRQ ++IARA L   P+L++D
Sbjct: 444 SRKDIENAAKMAHVEEFLSNLPEGLDTVIGENGLMLSGGQRQRIAIARAILAEAPILILD 503

Query: 632 EPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEV 691
           E TSA+D  SE  I+  L  L+   T I++ H+ S ++  D ++V+E+G II  G  +E+
Sbjct: 504 EATSALDTESERLIQDALETLQKRCTSIVVAHRLSTIENADCIMVVEQGRIIEKGKHNEL 563

Query: 692 L 692
           L
Sbjct: 564 L 564