Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  194 bits (493), Expect = 1e-53
 Identities = 145/473 (30%), Positives = 234/473 (49%), Gaps = 37/473 (7%)

Query: 246 SVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLI--- 302
           +V    R +   +S+ +    A + S++ L  A + L   W         PV+G+++   
Sbjct: 132 TVRKITRGMWALDSLNDLLLVALLPSIVMLVGATVVLGSYW---------PVMGLIVGLG 182

Query: 303 LVIYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGL----ETVKLFGAQGQFQYRWEEA 358
            +IY  +        +   +RLA+     L  +LA        VK FGA+     R E  
Sbjct: 183 SLIYIGVTVGLSMGYVSPAARLANAWDTRLGGALADAISCNAVVKAFGAET----REETR 238

Query: 359 VAH-MANWNIKSRR------ITDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIA 411
           + H +  W+ ++RR      +  +IQ+   F+  +   G++  G+ +   G  T G +  
Sbjct: 239 LGHVLVKWDNRTRRTWKRGTLNGTIQS---FMMVSMQAGILGTGLIMWQKGLATAGDITF 295

Query: 412 ATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMP---DEQEEGKRYIHRPIIQGK 468
              +     G L  +        +A + M  +  +  MP   +++ + KR     I +G+
Sbjct: 296 VLAMFFVLQGYLRDVGQDIRNLQRAVNDMEELVLLDKMPLGVEDRPDAKRI---NIGKGE 352

Query: 469 IELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVR 528
           I  D VTF Y         D S+TI PGE+V ++G  GSGKTT  +LI  LY    G +R
Sbjct: 353 IVFDHVTFQYGAHATPLYEDFSVTIKPGERVGLVGHSGSGKTTFVKLIQRLYDIKAGAIR 412

Query: 529 IDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVF 588
           ID  +I+ +    +R  I  V Q+ +LF+ ++ +NI  GRP +  RE+  AA +A    F
Sbjct: 413 IDGQNIADVTQASLRGQIAIVQQEPILFHRTLAENIAYGRPDASRREIEQAAKQASAHDF 472

Query: 589 TQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQ 648
               P G E  VGE G+ LSGG+RQ V+IARAFL   PVL++DE TS++D+ SE+ I+Q 
Sbjct: 473 IMSLPKGYETMVGERGVKLSGGERQRVAIARAFLADAPVLILDEATSSLDSESEVQIQQA 532

Query: 649 LSQLKPSETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEVLNDLRQGNVR 701
           + +L    T ++I H+ S +  +DR++V +KG I+ +G  H+ L  L  G  R
Sbjct: 533 MERLMDGRTTLVIAHRLSTVRALDRLLVFDKGRIVEEG-DHQALIRLHDGIYR 584