Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., ABC transporter, nucleotide binding/ATPase protein (protein) from Agrobacterium fabrum C58

 Score =  215 bits (548), Expect = 4e-60
 Identities = 147/569 (25%), Positives = 278/569 (48%), Gaps = 20/569 (3%)

Query: 143 FWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIF 202
           F S + K+K  +  V +AS L+N+  ++  +F   VYD+++P+ +  +L  L   ++V++
Sbjct: 4   FNSFLTKNKSTFFAVGLASALMNILNLSGSLFMLEVYDRILPSKSIPSLVALVVLLIVLY 63

Query: 203 LFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIRE 262
            F   F  LR   +       D  ++ KLF   +   + A     G   + + + + IR+
Sbjct: 64  AFLMGFDALRGRILARISDNMDDALNQKLFRASISAPLLASSKIDGL--QIVGDLDQIRQ 121

Query: 263 FFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGS 322
           F +    ++  D+P+  ++L++ + +   + +  + G ++LV+ + L     +RA ++  
Sbjct: 122 FLSGPGPAAFFDIPWLPIYLLICFALHPWIGFAVLGGAVVLVVLTLLTNWLTERATKQAY 181

Query: 323 RLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGF 382
               Q+   +  S   +E++K  G  G     W+E        + K R +T S  +TAG 
Sbjct: 182 TARGQRNVLVGSSQRNIESIKTMGMMGAVTSMWDEL-------HSKYRSVTLSTSDTAGM 234

Query: 383 VQQAANI-------GMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQ 435
           +   +         G++ +G  L+ +G  + G +IA ++LS +A+GP+         +  
Sbjct: 235 LGAMSRTFRLLLQSGVMAIGAVLVIDGHASAGSIIAGSILSAKALGPVEHAIANWRSFMT 294

Query: 436 AKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHP 495
           A+     + + + +  E       +  P  Q  + +DRVT   PN    +V D+S T++ 
Sbjct: 295 ARQGWKRVNEFLELVPEPAPP---LSLPRPQFTVAVDRVTGGPPNGARDTVADISFTLNA 351

Query: 496 GEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVL 555
           G+ + IIG   SGK+TL RL+ G++    G VR D   ++Q     + ++IG +PQ   L
Sbjct: 352 GDGLGIIGPSASGKSTLARLMTGIWPYERGSVRFDGAALNQWDFEFLGKSIGYMPQQVEL 411

Query: 556 FYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSV 615
             G++  NI      +    ++ AA  A V       P G +  +G+ G  LSGGQ+Q +
Sbjct: 412 MPGTVAQNIARFDRNATAESIVAAAKAAQVHELILNLPNGYDTSIGDRGEALSGGQKQRI 471

Query: 616 SIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKP-SETLILITHKTSMLDVVDRV 674
            +ARA  G P  +L+DEP S +D+  E  ++  +  ++     +++I H+ S L+ ++ V
Sbjct: 472 GLARALFGEPFFVLLDEPNSNLDSEGEAALRNAIGDIRARGGIVVVIAHRPSALESINMV 531

Query: 675 IVMEKGCIIADGPKHEVLNDLRQGNVRAV 703
           +VM  G ++  G K EVL  + + N+R V
Sbjct: 532 MVMSNGRMLRFGTKEEVLAQILRQNIRQV 560