Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., RNase E specificity factor CsrD from Vibrio cholerae E7946 ATCC 55056

 Score =  111 bits (277), Expect = 1e-28
 Identities = 115/502 (22%), Positives = 217/502 (43%), Gaps = 32/502 (6%)

Query: 157 LAILVIGMFAVAFI--LKRSL--------RPLQLIVNKMEQVANNQFGEPLPRPNTRDLI 206
           LA+L+I  F +  +  LK  L        R   ++  ++EQ A    G+P   P T    
Sbjct: 149 LAVLLIVFFLIRGLKWLKEQLLGSELLEERGRMILAGRVEQHAK---GDPREWPFTAS-- 203

Query: 207 YVVDGINKMSEQVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSESGI-G 265
              + ++++ E+++ A + +++    +R + +LD ++   NR  Y S+L   L ESG  G
Sbjct: 204 ---EALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGTANRVLYDSKLESALLESGAHG 260

Query: 266 GVAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSIT-IKDISIARISTYEFGIIMPNM 324
           GV +L+ + ++   EE      D  + E+ + L N +    D  ++R     F + +P+ 
Sbjct: 261 GVMMLRVDDLESAREESPKRTLDEFIIEVGECLSNIVQRYPDAILSRYYEDVFALFIPHQ 320

Query: 325 DETELKIVAESIITCVDDINPDPTGMAKAN-LSLGVVSNKRQSSTTTLLSLLDNALAKAK 383
              ++  VA   I  ++ INP P  + + N   +GV   +       ++  ++ AL  A+
Sbjct: 321 GSKDIAQVATQAIKLIERINP-PEPLPEDNWFHIGVTMYQEGERRGRIIDEMETALKSAQ 379

Query: 384 SNPELNYG-FISSDTDKIILGKQQWKTLVEEAIHNDWFTFRYQAA---NSSWGKTF-HRE 438
                 +  F      +   G  +W+TL E+ +  +      QA    +++  + F H E
Sbjct: 380 LQGVNAWSRFQKPKQLQEDRGSVRWRTLFEQVLRPEEILLYRQACYRISANGEREFLHYE 439

Query: 439 VFSAFE--KDGVRYTANQFLFALEQLNASHIFDQYVIERVIQQLEKGELTDPLAINIAQG 496
           +F+  +  + G+   A++F  ALE +    + D+ V   V+  L++ EL +PL++N+   
Sbjct: 440 LFARIQDPQQGI-LKASRFSSALETVGYEAMLDRAVFSSVVSFLKRSELVEPLSVNLHVV 498

Query: 497 SISQPSFIRWI-SQTLSKHLSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDN 555
             +   + RWI ++ +    S+   L FE  E   VN   Y       +   G    V  
Sbjct: 499 PFNDKRYARWIRNELMQMPFSLRTALSFEFSEAHLVNHLDYMRPIIRMLAGLGCKIVVGQ 558

Query: 556 YGRNFQSLDYINEFRPKYVKLDYLFTHHLDDERQ-KFTLTSISRTAHNLGITTIASRVET 614
            GR   S  YI + +  Y+KL       +D   + +  + S+           +A  VET
Sbjct: 559 AGRTIVSTHYIKDLKVNYLKLHRSLIKKIDQRHENQLFVRSLVGVCGGTQAEVVAVGVET 618

Query: 615 QTQLDFLSEHFIEVFQGFIVDK 636
             +   L    +   QG + D+
Sbjct: 619 TQEWQTLQMLGVSGVQGRLFDE 640