Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., hemolysin D from Pseudomonas simiae WCS417

 Score =  142 bits (357), Expect = 3e-38
 Identities = 116/446 (26%), Positives = 208/446 (46%), Gaps = 28/446 (6%)

Query: 42  LLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVK 101
           L L+    +R+   +++  F   + WA+ A +DK     GKV+ S   + +Q+  GG+V+
Sbjct: 17  LALDDKQYSRLGWLLVLGGFAGFLGWAALAPLDKGVAVPGKVMVSGHRKTVQHPAGGIVE 76

Query: 102 QILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEE 161
           +I VR+G+ V  GQ L+ L +T  R+  +    Q     AS  +LSA    +        
Sbjct: 77  RIDVRDGDVVSAGQVLLRLKETPLRAQMQSLRSQYLASLASEARLSAESEGL-------- 128

Query: 162 KNWANSVQLDYSKLAF-PPVLSDSQP-DLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQ 219
                      S + F P +L+D +    +  QR  +      L  +   L + I   + 
Sbjct: 129 -----------SAIRFGPELLNDPEAAGTLSLQRQLFNSRAQALATEQQGLRETIAGAEA 177

Query: 220 DLI---EAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTST 276
            L    +++A  ++ R + +   ++L     LA EG +P+  LL  +R  +     +   
Sbjct: 178 QLRGTRDSQASKVHQRAALN---EQLQGLRELAREGYIPRNRLLDSERLYSQIDGAIAED 234

Query: 277 ELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVV 336
             +I  L+  V E  L      + F+ + + +L + + +   L       E ++  ++V 
Sbjct: 235 YGRIGQLQRQVMELRLRIRQLGEDFQKDLRGQLAETRTRSDDLRNRLASAEFELANSLVR 294

Query: 337 SPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFS 396
           +P +G V  L V T GGVI+PG  +++IVP  + LLVEA++  Q +  + P LP  + FS
Sbjct: 295 APASGVVVGLDVYTEGGVIKPGQALMDIVPQGEPLLVEARVPVQMVDKVHPGLPVELMFS 354

Query: 397 AYDFTRYGGLEGTLEHISADTTQDEEGNS-FYLVRVRTKETTLGHDQNLPIIPGMTASVD 455
           A++ +    + G +  +SAD   DE  +  +Y +R +     +     + I PGM     
Sbjct: 355 AFNQSTTPRVAGEVTLVSADRQVDERTDEPYYTLRAQVSAAGMQQLDGVQIRPGMPVETF 414

Query: 456 IITGKRTVLDYLLKPILSAQSNALRE 481
           + TG+R++L+YL KP++     AL E
Sbjct: 415 VKTGERSMLNYLFKPLMDRTHMALVE 440