Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC from Variovorax sp. SCN45

 Score =  187 bits (476), Expect = 5e-52
 Identities = 130/450 (28%), Positives = 229/450 (50%), Gaps = 31/450 (6%)

Query: 37  DKTAALLLNTPHSARIILWVMV-AFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNL 95
           DK AA    T    R   W++  A  +LA+    +  ++ V V  G+V+PS +V+ IQ+L
Sbjct: 14  DKRAA---QTSPQGRRRQWIIGGAVAVLALVGLGFP-METVVVAPGRVIPSDRVKSIQHL 69

Query: 96  EGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSA-SISSVI 154
           EGG+V  +LV+EG++V+ GQ L+ +D      +  E   + A   A+ ++L A S    +
Sbjct: 70  EGGIVSSVLVKEGDKVKTGQPLVEIDLGGSGLNLEELTARYAATQATRVRLMAESRGQPL 129

Query: 155 IDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQI 214
             E+F +                     D    + E +   Y+      R  ++     +
Sbjct: 130 RRESFAK---------------------DIDEGVFEGETGAYQARALEQRGVMAGAVSGL 168

Query: 215 KQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELT 274
           +Q +   +E +A++  L    +  +KEL+I+E L +E +V ++E+L+ +RQ    R EL 
Sbjct: 169 EQARSKKLEQQAKVKGLGDRLELMQKELEISEQLLSEKLVGQVEVLEKRRQAESVRSELA 228

Query: 275 STELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTV 334
                +    +A+ EA      A  ++R    D+L   + + +SL+E       + +RTV
Sbjct: 229 VARQGVVSADAAITEAQAKMAEAEGRYRRRASDELATVERQFASLSEDLARARTQRSRTV 288

Query: 335 VVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVK 394
           V +P  G VK L  ++ G V++PG +I+E+VP ED ++VEA++ P D  F+     A VK
Sbjct: 289 VKAPSDGIVKGLRNSSPGWVVKPGESILEVVPDEDEIMVEARLNPNDRGFIEVGQTARVK 348

Query: 395 FSAYDFTRYGGLEGTLEHISADTTQD---EEGNSFYLVRVRTKETTLGHDQNLPIIPGMT 451
            +AYD+ RYG ++G ++ ++AD  +D     G  +Y + +   ++ +G D+N  I  GM 
Sbjct: 349 ITAYDYLRYGAVDGKVKLVAADADRDPAISNGAPYYRLLISMSQSHVGRDEN-RITAGME 407

Query: 452 ASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           + VD+  G    + Y+L+P+L  +  A RE
Sbjct: 408 SEVDLRVGTDPFIWYILRPVLKLRREAFRE 437