Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., RTX toxin transporter, determinant D from Variovorax sp. SCN45

 Score =  174 bits (440), Expect = 8e-48
 Identities = 111/445 (24%), Positives = 220/445 (49%), Gaps = 15/445 (3%)

Query: 40  AALLLNTP-HSA-RIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEG 97
           A  L +TP H A R + + ++A F++A+ W+ + +ID V V  GK++ S + ++IQ LE 
Sbjct: 61  ALSLQDTPVHPAPRRLAYALIALFLIALTWSIFGQIDIVAVAPGKIIVSERTKIIQPLEV 120

Query: 98  GLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDE 157
            +VK++LVR+G+ V+ GQ L+ LD T   +D    ++Q+ ++ + VL+  A   ++    
Sbjct: 121 SVVKRVLVRDGDHVEAGQPLVELDPTTANADKTSIDEQLKSVQSEVLRTRALQQALNATT 180

Query: 158 NFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQK 217
                    ++   +S++             ++  R Q   +  ++  +L+  S +I ++
Sbjct: 181 ASRAPELGKNIPGSWSEVD------------IDAARAQLSDEWSDITAKLAKASAEINRR 228

Query: 218 QQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTE 277
           Q ++      +  L  +   A++       LAN+G +         R+  +  R+L +  
Sbjct: 229 QAEIATVREMVAKLETTVPIARQREADFHQLANQGFMSSHANQDRTRERIELERDLATQR 288

Query: 278 LKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVS 337
            ++    + +RE+  +R     + +   + +   A+ K    T+       +   T + +
Sbjct: 289 ARLAEANATLRESENTRAAYIAETKHSLRTREAAAELKRQQGTQDLAKAGQRERLTTLKA 348

Query: 338 PVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSA 397
           PV GTV+ L  +T GGV+     ++ IVP    +  E  +  +DI F+ P   A +K   
Sbjct: 349 PVAGTVQQLAAHTEGGVVTEAQPLMVIVPDGAQVTAEVTLDNKDIGFVSPMQEAAIKLET 408

Query: 398 YDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTLGHDQN-LPIIPGMTASVDI 456
           + +TRYG +  T++ ++AD   DE+  + + V +   +TT+  D+  + + PGM  + +I
Sbjct: 409 FPYTRYGTVNATVKTVTADAVNDEKRGAIFPVTLNLNDTTIDVDEKPIKLSPGMNLTAEI 468

Query: 457 ITGKRTVLDYLLKPILSAQSNALRE 481
            TGKR V+++LL P+  A   ++RE
Sbjct: 469 KTGKRRVIEFLLSPVQRASGESMRE 493