Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

 Score =  168 bits (425), Expect = 4e-46
 Identities = 121/432 (28%), Positives = 203/432 (46%), Gaps = 16/432 (3%)

Query: 51  RIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQ 110
           R + W ++ F  LA+AWA   EID +   +GK+VPS + ++IQ  E  +V+ I V +G+ 
Sbjct: 55  RYLQWSLLMFIGLALAWACIGEIDVIASAEGKIVPSGRSKLIQASEVAVVQSIHVVDGQP 114

Query: 111 VQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQL 170
           V+KG  L+ L+     +D +    ++  L A + Q  AS     +D +    + A  +  
Sbjct: 115 VRKGDVLVELEGQLTEADIKRLGSEL--LAAQIDQARASTLLSALDGDVAPASLAPLI-- 170

Query: 171 DYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIIN 230
                  P   +  Q         QY +    L+  L     +I Q+  ++  A+ R   
Sbjct: 171 -------PQATAAQQAGAQRWLEGQYLE----LQATLEQADAEIGQRAAEIRSAQGRADA 219

Query: 231 LRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREA 290
           LRQ     ++     + L +E  V K   L+ ++   +  REL     +I  L +A   A
Sbjct: 220 LRQLLVITRQLTADYKLLFSESAVAKHTYLEKEQARLEQERELALQRSRIDELNAARLAA 279

Query: 291 MLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNT 350
              R  A  + R    D   +AQ ++++L +     E +    V+ SPV GTV+ L ++T
Sbjct: 280 QHRRSGAIAQLRRAMLDLHGEAQRRIATLEQELNKAEQRHRLKVLTSPVDGTVQQLAIHT 339

Query: 351 VGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTL 410
            GGV+ P   ++ IVPT + + VE ++  +DI F+ P     VK   + FTRYG + G +
Sbjct: 340 QGGVVTPAQTLMVIVPTGEPVEVEVKVENKDIGFVFPGQHVEVKIETFTFTRYGVVPGVV 399

Query: 411 EHISADTTQDEEGNSFYLVRVR-TKETTLGHDQNLPIIPGMTASVDIITGKRTVLDYLLK 469
           E IS D  +D+     Y  R++  KE     D +LP+  GM    ++I  +R V+ + L 
Sbjct: 400 ESISDDAIEDDRHGLLYSARIKLAKEALRVGDNDLPLTAGMAVRAEVIVDRRRVISFFLS 459

Query: 470 PILSAQSNALRE 481
           P+      +L+E
Sbjct: 460 PLQRHAKESLKE 471