Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Protein secretion ABC efflux system, membrane fusion protein from Pseudomonas putida KT2440

 Score =  234 bits (598), Expect = 3e-66
 Identities = 165/465 (35%), Positives = 243/465 (52%), Gaps = 79/465 (16%)

Query: 23  SYNKLTAEELDYVDDKTAALLLNTPHSARIILW--VMVAFFILAIAWASWAEIDKVTVGQ 80
           S ++L A  LD  DD+          + RII    +M+A F+   AWA+W E+ +V+ G 
Sbjct: 2   SNHELPASYLDGQDDQAVF------RAGRIITLCALMLAAFL---AWAAWFEVTEVSTGT 52

Query: 81  GKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLT 140
           GKV+PSS+ QVIQ+ EGG+V Q+ V EG+ V++GQ L  LD T+  S   E E +     
Sbjct: 53  GKVIPSSREQVIQSFEGGIVAQMSVAEGDLVERGQVLAQLDPTKTASSVGESEAKYRAAR 112

Query: 141 ASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDL 200
           AS  +L A ++                       L FP  L DS PDL++ +   Y+   
Sbjct: 113 ASQARLQAEVTG--------------------KPLTFPESLRDS-PDLIDAETALYQTRR 151

Query: 201 DNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELL 260
             L   L+                      ++ S    + EL ITE LA  G   ++E++
Sbjct: 152 RGLEQTLA---------------------GIQDSLQLVRSELKITENLAKMGASSRVEVI 190

Query: 261 KLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLT 320
           +L RQ ++   EL + E +   L  A                   +++L +A  +  +L+
Sbjct: 191 RLNRQRSEL--ELKANEARSDYLVRA-------------------REELAKASAEADALS 229

Query: 321 ESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQ 380
           E   G  D + R  + SPV G VK + VNT+GGV+QPG  +++IVP ++ LL+E +IAP+
Sbjct: 230 EVIRGRSDSLTRLTLRSPVRGIVKDIEVNTLGGVVQPGGQVMKIVPMDERLLIETRIAPR 289

Query: 381 DIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRV--RTKETTL 438
           DI F+ PD  A VK SAYD++ YGGL+G +  IS DT QDE     Y  RV  RT++ +L
Sbjct: 290 DIAFIHPDQAAKVKISAYDYSVYGGLDGKVVGISPDTLQDEVKPEIYYYRVFIRTEQDSL 349

Query: 439 GH--DQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
            +   +   I+PGM A+VDI TG++T+LDYL+KP L+    ALRE
Sbjct: 350 QNKAGKRFAIVPGMIATVDIRTGEKTILDYLIKP-LNRAKEALRE 393