Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

 Score =  346 bits (888), Expect = e-100
 Identities = 190/445 (42%), Positives = 280/445 (62%), Gaps = 26/445 (5%)

Query: 41  ALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLV 100
           AL+ + P   R+ +W ++ FF+  I WAS A ID+VT G+GK +PSS+VQ IQNLEGG+V
Sbjct: 35  ALIEDAPRVVRLTIWGVILFFVFLIVWASVAPIDEVTRGEGKAIPSSKVQKIQNLEGGIV 94

Query: 101 KQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISS--VIIDEN 158
            +I  +EG+ V+ GQ L+ LD+TRF S+  E E     +   V +LSA +    +IIDE 
Sbjct: 95  AEIFAKEGQIVEVGQPLLRLDETRFASNVGETEADRLAMALRVERLSAEVEDRPLIIDEK 154

Query: 159 FEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQ 218
                                 L  + P+    +   Y+     L++++  L QQ+ Q+Q
Sbjct: 155 ----------------------LRKAAPNQAASEESLYQSRRQQLQDEIGGLQQQLVQRQ 192

Query: 219 QDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTEL 278
           Q+L E  ++      S +  +KE+ ++EPL   G + ++E+L+L+R   + R +L ST L
Sbjct: 193 QELREYSSKRTQYANSLELLRKEISMSEPLVATGAISQVEVLRLRRAEVENRGQLDSTAL 252

Query: 279 KIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSP 338
            IP  ++A+RE          KFR+E   +LN+A+ +L+  T ++  L+D+V+RT+V SP
Sbjct: 253 AIPRAEAAIREVQSKIEETRGKFRSEALTQLNEARTELNKATATSKALDDRVHRTLVTSP 312

Query: 339 VTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAY 398
           V G VK L VNT+GGVIQPG +IIE+VP +DTL++EA+I P+DI FL P   A VKF+AY
Sbjct: 313 VRGIVKQLLVNTIGGVIQPGSDIIEVVPLDDTLVIEAKILPKDIAFLHPGQEATVKFTAY 372

Query: 399 DFTRYGGLEGTLEHISADTTQDEE-GNSFYLVRVRTKETTLGHDQN-LPIIPGMTASVDI 456
           D+T YGGL+  LE I ADT  DE+   ++YL+++RT  + LG D+  L IIPGM A+VDI
Sbjct: 373 DYTIYGGLKAKLEQIGADTITDEDKKTTYYLIKLRTDRSHLGTDEKPLLIIPGMVATVDI 432

Query: 457 ITGKRTVLDYLLKPILSAQSNALRE 481
           +TGK+T++ YLLKPI+ A+S ALRE
Sbjct: 433 MTGKKTIMSYLLKPIMKARSEALRE 457