Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., hypothetical protein from Methylophilus sp. DMC18

 Score = 64.7 bits (156), Expect = 6e-15
 Identities = 101/443 (22%), Positives = 179/443 (40%), Gaps = 73/443 (16%)

Query: 44  LNTPHSARI----ILWVMVAFFILAIAWASWAEIDKVTVGQGKVV---PSSQVQVIQNLE 96
           + TP   R+    + W++V   +L +A+        VT   GKV    PS +VQ +    
Sbjct: 13  VQTPEHLRVWIKRMAWLLV---VLPLAFLPLPWQQNVTA-LGKVTAYSPSERVQTVDAPV 68

Query: 97  GGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQ-QVANLTASVLQLSASISSVII 155
            GL++   V+EG QV++G  L+ + DT    +FR+R Q Q  NL   +    + +S    
Sbjct: 69  SGLIQHWYVQEGSQVKQGDVLLEISDT--DPNFRQRLQAQRDNLEDKLASKQSELS---- 122

Query: 156 DENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIK 215
                    A SVQ D         ++ +          QY+ D+ N             
Sbjct: 123 ---------AYSVQRDNLAAGRDAKITAA----------QYKLDVAN------------- 150

Query: 216 QKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTS 275
              Q ++ A   + + + + D A  ++   + L  +G+V K +    +R      R L S
Sbjct: 151 ---QKILSAREAVNSAQATLDAATMQVKRMQRLLGDGLVSKRDTEVAERDHTIASRNLNS 207

Query: 276 TELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLN-----------QAQDKLSSLTESAV 324
            + +   L+SA+ EA  ++    Q  R + Q  L+           +  D  +SL  S +
Sbjct: 208 VQAQ---LQSAMAEAQSAQAEIRQ-VRADTQAYLDSVTANINKIKGEVSDAENSLHSSEI 263

Query: 325 GLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVF 384
            L  + N   +++P  GT+  L VN+   +I+ G  ++ IVP      VE  +  +D   
Sbjct: 264 SLA-RQNMQKIIAPRDGTIFRLPVNSQSQIIKQGDPLLIIVPHTSQRAVELWVDGRDAPL 322

Query: 385 LRPDLPAIVKFSAYDFTRYGGLE----GTLEHISADTTQDEEGNSFYLVRVRTKETTLGH 440
           +  D    ++F  +   +  G      GT E   A     + G   + + V  KE T   
Sbjct: 323 ITRDSVVRLEFEGWPAIQVPGWAQVGVGTFEGKIAFVDPTDNGTGHFRIMVIHKEGTPQW 382

Query: 441 DQNLPIIPGMTASVDIITGKRTV 463
            +   +  G++A   ++  K T+
Sbjct: 383 PEARFLRQGISAKGWVLLEKVTI 405