Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., Type I secretion system, membrane fusion protein LapC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  228 bits (581), Expect = 3e-64
 Identities = 155/437 (35%), Positives = 233/437 (53%), Gaps = 69/437 (15%)

Query: 49  SARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREG 108
           + RI+L   + F IL I WA +  +D+V+ G GKV+PSS+ QV+Q+L+GG++ Q+ VREG
Sbjct: 24  AGRIVLICSLLFLILGI-WAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREG 82

Query: 109 EQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSV 168
           ++VQ  Q +  LD TR  S+  E   +     AS  +L+A ++ +               
Sbjct: 83  DRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDL--------------- 127

Query: 169 QLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARI 228
                 LAFP  L+   PDL+  +   Y                  K ++  L + EA  
Sbjct: 128 -----PLAFPAELN-GWPDLIAAETRLY------------------KSRRAQLADTEAE- 162

Query: 229 INLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVR 288
             LR +     KEL IT+ L   G    +E+L+LQRQ +D         LKI  L+S   
Sbjct: 163 --LRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLG-------LKITDLRS--- 210

Query: 289 EAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYV 348
                      ++  + ++ L++A  ++  L+    G ED V R  V SPV G VK + V
Sbjct: 211 -----------QYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQV 259

Query: 349 NTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEG 408
            T+GGVI P   ++EIVP +D LL+E +++P+DI F+ P   A+VK +AYD+  YGGL+G
Sbjct: 260 TTIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDG 319

Query: 409 TLEHISADTTQDEEGNS--FYLVRVRTKETTLGH--DQNLPIIPGMTASVDIITGKRTVL 464
            +E IS DT QD+      +Y V +RT +  L +   +   I+PGM A+VDI TG++T++
Sbjct: 320 VVETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIV 379

Query: 465 DYLLKPILSAQSNALRE 481
           DYL+KP   A+  ALRE
Sbjct: 380 DYLIKPFNRAK-EALRE 395