Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., Putative type-I secretion protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  109 bits (272), Expect = 2e-28
 Identities = 96/439 (21%), Positives = 197/439 (44%), Gaps = 44/439 (10%)

Query: 54  LWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQK 113
           + ++++  IL I    + EI+ V  GQG +      Q+I   +GG ++ I V EG+ V+K
Sbjct: 1   MMIIISLTILIIILTYFIEINSVVHGQGVITTKDNAQLISLSKGGTIQDIYVAEGDTVKK 60

Query: 114 GQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYS 173
           G+ L  + +   + +++    Q   L   V ++S  +         +++N +  + LD +
Sbjct: 61  GELLAKVVNLDLQKEYQRYRTQKGYLDKDVNEISFIL---------DKENESGLITLDGT 111

Query: 174 KLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQ 233
           +      +  +  +LV  Q         +L +++S L +++  K+++L            
Sbjct: 112 RSLSNKEVK-ANIELVHSQIRAKELKKTSLDSEISGLQEKLSSKEKELA----------- 159

Query: 234 SYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLS 293
                 +E++I  PL  +G+ P    L  ++     + E+   E  I + K  + E +++
Sbjct: 160 ---LLAEEINILSPLVKKGISPYTNFLNKKQAYIKVKSEINDIESSITLKKDDI-ELVVN 215

Query: 294 RINAA-QKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTL--YVNT 350
            I A   + R      +++   +L  +  +   +E ++N   + SPV G +  +     T
Sbjct: 216 DIEALNNELRLSLSKIISKNLQELEVVNSTLKVIEKQINEEDIYSPVDGVIYKINKSATT 275

Query: 351 VGGVIQPGMNIIEIVPTEDTLLVEAQIAP--QDIVF----LRPDLPAIV--KFSAYDFTR 402
            GGVIQ    + EI P   T+L + +I P  +D ++    ++ D+ +I+  K  +Y+   
Sbjct: 276 HGGVIQAADLLFEIKPKVRTMLADVKILPKYRDQIYVDEAVKLDVQSIIQPKIKSYN--- 332

Query: 403 YGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTLGHDQNLPIIPGMTASVDIITGKRT 462
                 T+++IS D+ ++  G +            +  D    + PGMT    +ITGK +
Sbjct: 333 -----ATIDNISPDSYEENTGGTIQRYYKVIIAFDVNEDDLRWLKPGMTVDASVITGKHS 387

Query: 463 VLDYLLKPILSAQSNALRE 481
           +++YLL P++     A  E
Sbjct: 388 IMEYLLSPLMKGVDKAFSE 406