Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., Hemolysin secretion protein D, plasmid from Azospirillum sp. SherDot2

 Score =  140 bits (354), Expect = 8e-38
 Identities = 119/471 (25%), Positives = 211/471 (44%), Gaps = 49/471 (10%)

Query: 32  LDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQV 91
           LDY+ D  A      P +AR  L+V+    +  + WA +A++D++    G++V ++ + V
Sbjct: 58  LDYLPDGAAIEHAPLPRAARSTLYVLAGLLVALVLWAGFAQVDRIVTAGGRLVTTAPMVV 117

Query: 92  IQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASIS 151
            Q LE  +V+ + V+ G++V+ G +L  LD T   +D  +   ++A++ A + +L A + 
Sbjct: 118 AQPLETAVVRGVDVQVGDRVRAGDRLATLDPTFAAADLADLTAKLASVEAQIGRLRAELD 177

Query: 152 SVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLS 211
                              D++  A  P  +  Q  ++ER+R +YR  L +L  +   L 
Sbjct: 178 GG-----------------DFTPAAGNPDAA-VQAAILERRRAEYRSRLASLDEKAGQLD 219

Query: 212 QQI---KQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLND 268
             I   ++ Q  L E  A +  +           DI   L       ++  L+ + +   
Sbjct: 220 SAIAASRRAQTGLAERLAVVGEVE----------DIRRQLQVRQTGSRLTWLEARVERLR 269

Query: 269 TRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLED 328
            R ELT+ + +       +R     R     ++R +  ++L +   + ++L E     E 
Sbjct: 270 MRDELTALQDREQASAHELRGVQADRAAFVDEWRRKTAEELVEQSRQRATLVEQIAKAER 329

Query: 329 KVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPD 388
           + +   + +PV   V  +   +VG VI+    ++ +VP +  L VEA+I  +DI  +R  
Sbjct: 330 RRSLVTLTAPVDAVVLEVAKRSVGSVIREAEPLVTLVPADVPLEVEAEIPSRDIGLVRVG 389

Query: 389 LPAIVKFSAYDFTRYGGLEGTLEHISADT-TQDEEG----------------NSFYLVRV 431
               VK  A+ F R+G L G +  ISAD  T D  G                 + +  R+
Sbjct: 390 DFVRVKLDAFPFQRHGTLPGEIRTISADAFTHDPSGPQGAAAINPDGPRPAAGAVFRTRI 449

Query: 432 RTKETTL-GHDQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           R  +T L G      + PGM AS +I  G R+VL Y L P++ A   ++RE
Sbjct: 450 RLTDTQLEGVPAGTALSPGMVASAEIRVGTRSVLSYFLYPVIRALDESIRE 500