Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., Type I secretion system membrane fusion protein PrsE from Azospirillum sp. SherDot2

 Score =  229 bits (584), Expect = 2e-64
 Identities = 128/427 (29%), Positives = 232/427 (54%), Gaps = 20/427 (4%)

Query: 56  VMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQ 115
           V +A F+ A+ WAS AE++  +   G VVP +  Q +Q+ EGG+V+ ILV+EG+ V+ GQ
Sbjct: 59  VSIAAFLAALGWASIAELNVSSSAPGDVVPLAYNQSVQHFEGGIVRDILVQEGDSVKAGQ 118

Query: 116 QLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKL 175
            L+ LD T+ R+D  E   ++ +L+A + +L A ++                       +
Sbjct: 119 VLVELDQTKTRADLEELRLRLGSLSADIARLEAEVTR-------------------RDSI 159

Query: 176 AFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSY 235
            FP  L+  +PDLV + RD +R   D L + + +  Q I Q++Q +    ARI   + + 
Sbjct: 160 DFPETLTRERPDLVAQTRDLFRARRDRLASDIDIQRQDIVQREQQMAAVRARISGSQVAQ 219

Query: 236 DYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRI 295
              +++L I+E L    +  +++ L+L R        +      +   ++A+ EA    +
Sbjct: 220 GLIREQLSISESLLKREITNRMKHLELLRDDARITGSIAEDRATLAQAEAALAEARSKLV 279

Query: 296 NAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVI 355
              +K+  E ++ L++A+   + L++     +D ++R+ + +P+ G VKTL V+T G V+
Sbjct: 280 WIGRKYEEEGRNALDEARRNHNELSQRLTRYQDSLDRSSMRAPMDGIVKTLAVSTKGAVV 339

Query: 356 QPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISA 415
           + G  ++E+VP +  L+V+A++  QDI ++R D P +V  +  D +R+G +EG +  IS 
Sbjct: 340 KAGETVVELVPRDGNLVVDARLPVQDIGYVRADQPVVVTLAGSDASRFGHIEGRVRTISP 399

Query: 416 DTTQDEEGNSFYLVRVRTKETTLGH-DQNLPIIPGMTASVDIITGKRTVLDYLLKPILSA 474
           DT  D    S+Y VRV    T   +  +   + PG+  +  I+TG+RT+LDY+  P+L+ 
Sbjct: 400 DTLLDANKQSYYKVRVELPVTRFDYGGKTYELFPGVRVTCSILTGRRTILDYVFSPVLNG 459

Query: 475 QSNALRE 481
             +A++E
Sbjct: 460 LQHAMQE 466