Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  157 bits (396), Expect = 9e-43
 Identities = 120/423 (28%), Positives = 197/423 (46%), Gaps = 29/423 (6%)

Query: 67  WASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFR 126
           WA+   +    V  G +V  S  + +Q+ +GG+V +ILV EGE+V+ G  ++ LD T+ R
Sbjct: 35  WAATTNLAGAVVASGHLVVDSYTKKVQHPKGGVVGEILVNEGERVKAGDVVMRLDATQTR 94

Query: 127 SDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVL--SDS 184
           ++     +++  L A + +L A                      D ++L FP  L     
Sbjct: 95  ANLAIVTKRLDELGARMARLEAERD-------------------DLAELIFPQALIARRD 135

Query: 185 QPDLVERQRDQ-----YRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSYDYAK 239
            PD+    R +     +R+     R   + L+++I Q + ++   +A+ +         +
Sbjct: 136 DPDVASAMRSETKLFEFRKSYREGRK--AQLAERITQFEHEIEGLKAQEVAYDNGLAVLE 193

Query: 240 KELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQ 299
            E+   + L  +GVV    L  LQ Q      E              + E  L  +   Q
Sbjct: 194 AEITSQKSLREQGVVSVQRLNSLQTQAATFGGERGEKIAYQAQTAGRITETKLQILQIDQ 253

Query: 300 KFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGM 359
           + RTE   +L + Q ++    E  V  ED++ R  +V+P +G V  + V+TVGGV+ P  
Sbjct: 254 ELRTEVGRELREIQAQMGEFVERKVAAEDELKRIDIVAPQSGMVHEMAVHTVGGVVTPAD 313

Query: 360 NIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQ 419
            I+ IVP  D L +E QI P+DI  L+    A+++ +A++      LEG +  I+AD T 
Sbjct: 314 PIMLIVPDGDELALEVQIVPKDIDQLQVGQKAMLRMTAFNQRVTPELEGHVSRIAADITT 373

Query: 420 DEE-GNSFYLVRVRTKETTLGHDQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNA 478
           D+  G S+YL R+    +      N P++PGM A   I T +RT L Y+ KP+    S A
Sbjct: 374 DQRTGLSYYLARISVPVSEREKLNNAPLVPGMPAEAFIQTSERTALSYIAKPLTDQISRA 433

Query: 479 LRE 481
            RE
Sbjct: 434 FRE 436