Pairwise Alignments

Query, 287 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 255 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  109 bits (273), Expect = 5e-29
 Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 17/245 (6%)

Query: 44  MACHDHSYTQIVIGLKGQAEFEVRGMGNIVGPGQGCVVTSGSDHAFGGVVGQSDILVLNM 103
           +  H H + Q+V GL+G+ EFEV+G G  +      VV +G+ H      G SD LVL++
Sbjct: 16  LIAHSHEHPQLVFGLRGRLEFEVQGHGAGIDRQGLIVVPAGAHHTCASDAG-SDCLVLDV 74

Query: 104 PVPSDDDPLLLRKLNELAVGD-------VYFQLDGQIQRLIQMLVQEMQASPDDLLLGRA 156
           P     +P L   L E A              LD + Q+L+  L       P   L+ R 
Sbjct: 75  P----GEPWLREHLGEHADASRRLLDRPAAVSLDERQQQLVDWLATSPVHDP---LIAR- 126

Query: 157 CNDTVVALLQRHISALASVHKESRFDMEVVDRYIEQHLAHRISVAQLAGSVFLSESQFHV 216
                + L   + +A A VH   R      D +IEQH A+ + VA LA    LS ++ H 
Sbjct: 127 -QGAALLLASLNATAAARVHPSQRLPYSAFDAHIEQHAAYPLQVADLARIAGLSIARLHA 185

Query: 217 LFKEQMGLTPHQYVLNKRVDMAKKLIEQGRLNLGQVAELTGFSNQSTFTHTFSRLHGISP 276
            F  + G+TP  Y+  +R+  A++LI Q  L +G++A   G+S+QS F+    R  G +P
Sbjct: 186 RFTAECGMTPMDYIRQRRLLKARRLIVQTVLPMGEIAAQVGYSSQSAFSAAMLRAFGCTP 245

Query: 277 SQYKR 281
              +R
Sbjct: 246 LALRR 250