Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  261 bits (666), Expect = 1e-73
 Identities = 177/514 (34%), Positives = 279/514 (54%), Gaps = 22/514 (4%)

Query: 146 ITTEPYVSVTMQTLVVTLAEPVRYQGQLIGVAASNLALDKLIKDVLAIE----VPGKGYA 201
           I   PY       ++ +  EP+   G   G+  ++L+++  I+D+L         G G  
Sbjct: 201 IDPAPYKVGNAMVMLASFIEPIMIDGAFQGIVGADLSVN-FIQDMLTSADQKLYNGAGEM 259

Query: 202 ILVNQKGKIVAHPTQDL--ILKPTEEMSAQLTISKLNIAAKDHSLFQLSMD-GRDKVLMA 258
            L++  G++VA+ T+D   + +   ++     ++ LN        + +  + G  ++ + 
Sbjct: 260 ALISSNGRLVAY-TKDASKLGEKASDLLDSNELTNLNQLKAGEVRYDIDKEHGHIELFLP 318

Query: 259 EEVANTD--WLLVMVMDKGVL---EQPLNDMLMVQ-----IGIGLGILLV--MALLTSWF 306
             +   D  W L++ +    +    Q L   L  Q      G+ +  LL+  + LL  W 
Sbjct: 319 FTIGQADARWTLMLQLPLSAVMADSQKLQSDLEAQRKTDIFGMTIAGLLIAGIGLLVIWL 378

Query: 307 VARQL-NELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVDRLHQMVKNVR 365
           V   +   L  +   L DIA+G+GDLTRRL     DE+G +A+ FN F+ +L  M+  V 
Sbjct: 379 VGHGIARPLKQMVAMLNDIAQGEGDLTRRLTSDRADELGAIANGFNTFLIKLQGMITQVV 438

Query: 366 EVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIASNAENTAKNAT 425
                ++  ++H A  A + ++ +  Q  EI  VATAV EM +   ++A NA   A+ A+
Sbjct: 439 SSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQAAQAAS 498

Query: 426 QSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILSTIRGIAEQTNL 485
            + Q    G   ++ +  SI  LA+E+  AV ++  L   +  I+ IL+ IRGIAEQTNL
Sbjct: 499 HADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENINAILTAIRGIAEQTNL 558

Query: 486 LALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTE 545
           LALNAAIEAARAGEQGRGFAVVADEVR L+Q+T  +TEEIQT I  LQ+ T   V VM +
Sbjct: 559 LALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMIQQLQQGTRDVVRVMED 618

Query: 546 SHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADINVNTESVREV 605
           S    + SV    +   +L+ I++A+  I+DM TQIASAAEEQS V  DIN N  ++ +V
Sbjct: 619 SQSRTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSAVAEDINRNVINIGQV 678

Query: 606 SDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           ++++A  A +S   +  L  +A++  + I++FK+
Sbjct: 679 ANEVAGGADESSAASADLTKLAEQQRRLINQFKV 712