Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  255 bits (652), Expect = 4e-72
 Identities = 191/651 (29%), Positives = 321/651 (49%), Gaps = 30/651 (4%)

Query: 13  LSLKRKMV--FSVVVAIAVT-AAALVAAGYQTFEKDSWRAIESESR------NTLQAHAK 63
           +S+K+K+   F+V+  + +   A LV    +   +D +  ++S SR      N +    +
Sbjct: 1   MSIKQKLTWAFAVIAGLPIVLVATLVVINLRGEARDGF--LDSSSREIRQVSNAMNIFFQ 58

Query: 64  GIGD--WFLGKQLALKGLREEIER----NPQLELVPHLRQTLQ--------SGSFGLSYY 109
           GI     ++  Q  +     E+ +     P  EL     + L           ++    Y
Sbjct: 59  GINQNVEYMASQPMVAATGSELNKYMSATPSYELGEQASKILDFMTRLANSHPAYAYLSY 118

Query: 110 GNEQGEMFRQDPSLNTADYDPRVRGWYKEAKA-AGKPITTEPYVSVTMQTLVVTLAEPVR 168
           G   G            +YDPR R WY+ A A  GK + T  Y       ++V+    V 
Sbjct: 119 GVNDGGYTGWPAGQKFVNYDPRTRPWYQLAMANPGKTMRTGAYYWAADDAVLVSTVRTVA 178

Query: 169 YQ-GQLIGVAASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMS 227
            Q G   GV   +++L  L + V  I++   GY +LV   G ++  P +D      +  S
Sbjct: 179 NQLGNPGGVVNIDVSLKGLTEIVKQIKLGESGYLMLVESNGNVMVDP-RDATHNFKQLGS 237

Query: 228 AQLTISKLNIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMV 287
                +KL  A K   L ++ ++G   +          W  + ++++  + Q    +  +
Sbjct: 238 FGDGYAKLAKAGK--GLVEVELNGVHYMANVYPDQQLGWTFIGLIEQSEVMQTTTRLTWL 295

Query: 288 QIGIGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLA 347
              I + +  + A++ + F    +  + ++ N L DIA+G+GDLTR L++R +DE   LA
Sbjct: 296 IGVIAVVLAALFAVVGAAFAKLIVRPINSVTNGLEDIAQGEGDLTRNLEIRGRDETAQLA 355

Query: 348 DKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMA 407
           + FN+F+  +  +++++   +  +   +  +   ++  ++    Q++ + MV+TA  EM 
Sbjct: 356 NWFNQFLGAIRSLIQHIGTAASKILSTSSSSTRVSSDMAEAAGRQREAVDMVSTAFHEMV 415

Query: 408 SATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHAN 467
           +   E+A +    A++A    Q   +G  Q+  +  S+D+L+ E+  + + I +LE  +N
Sbjct: 416 ATANEVARSCSQAAQSADSGQQQAREGQQQIDAAVHSVDRLSHEIEQSAQSIQQLERDSN 475

Query: 468 EISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQT 527
            I +IL TIR IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L++RT  ST EI  
Sbjct: 476 AIQSILGTIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTADSTAEIDG 535

Query: 528 KIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEE 587
            +  L   T      M  S ++ + SV+ +     S   I E++  I DM TQIA+AAEE
Sbjct: 536 LLGNLASRTAEVAEQMHASLEVSQQSVSRIGLARDSFGQIRESVDVIRDMNTQIATAAEE 595

Query: 588 QSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFK 638
           Q  V  DIN +   +   +  +AE AQ + Q ++SL  ++ EL+  + RF+
Sbjct: 596 QHQVAEDINRHISQIHGDAQLVAELAQAARQDSESLAGLSNELDTLVRRFR 646



 Score = 36.6 bits (83), Expect = 4e-06
 Identities = 53/267 (19%), Positives = 104/267 (38%), Gaps = 26/267 (9%)

Query: 398 MVATAVTEMASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVR 457
           ++A     + +A A++     N+  N  + +  GE    +  + +   D+ AQ      +
Sbjct: 302 VLAALFAVVGAAFAKLIVRPINSVTNGLEDIAQGEGDLTRNLEIRGR-DETAQLANWFNQ 360

Query: 458 IISELEVHANEISTILSTIRGIAEQTNLLALNAAIEAARAGEQG-------RGFAVVADE 510
            +  +      I T  S I   +  +  ++ + A  A R  E               A+E
Sbjct: 361 FLGAIRSLIQHIGTAASKILSTSSSSTRVSSDMAEAAGRQREAVDMVSTAFHEMVATANE 420

Query: 511 V-RVLSQRTHASTEEIQTKIAGLQKVTTTAVSVMTESHKLVET--SVADVNQTGASLQAI 567
           V R  SQ   ++    Q    G Q++     SV   SH++ ++  S+  + +   ++Q+I
Sbjct: 421 VARSCSQAAQSADSGQQQAREGQQQIDAAVHSVDRLSHEIEQSAQSIQQLERDSNAIQSI 480

Query: 568 SEAIQQISDMATQIA-------SAAEEQS---LVTAD-----INVNTESVREVSDQLAEE 612
              I+ I++    +A       + A EQ     V AD          +S  E+   L   
Sbjct: 481 LGTIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAKRTADSTAEIDGLLGNL 540

Query: 613 AQQSVQQAKSLHAMAQELNKEISRFKL 639
           A ++ + A+ +HA  +   + +SR  L
Sbjct: 541 ASRTAEVAEQMHASLEVSQQSVSRIGL 567