Pairwise Alignments

Query, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  273 bits (697), Expect = 2e-77
 Identities = 197/644 (30%), Positives = 313/644 (48%), Gaps = 23/644 (3%)

Query: 11  MRLSLKRKMVFSVVVAIAVTAAALVAAGYQTFEKDSWRAIESESRNTLQAHAKGIGDWFL 70
           M  S+K+K++ S++VA+ + AA LV +  Q   +D  +  E+     L +  K +G+   
Sbjct: 1   MTFSIKQKLIISLIVAV-LAAAILVGSISQWIARDLVK--ENMEELQLPSLLKQVGNRVD 57

Query: 71  GKQLALKGLREEIERNPQL--------------ELVPHLRQTLQSGSFGL-SYYGNEQGE 115
            +   +  +   I  NP +               L+ +L   ++     + S+      +
Sbjct: 58  REASVMLTVAHGIASNPDILAWSSAGADSAGERRLLSYLSNIVEFNDLTVASFVDRTTYK 117

Query: 116 MFRQDPSLNTADYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQGQLIG 175
            + QD  L     D    GW+   K +G+PI+   Y        +    + V  +G + G
Sbjct: 118 YWNQDGFLRVLQND-EFDGWFFAYKNSGEPISLSLYNEPGQGYRLFANYQQVNGRG-MSG 175

Query: 176 VAASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSAQLTISKL 235
           VA S   +D+L+  + A+++   G+  LV+  G I+AHP  +L+ K      +  + S  
Sbjct: 176 VAKS---VDELLDIINAVKIAQTGFVFLVDGNGTIIAHPNTELLGKAKLASISDSSTSGQ 232

Query: 236 NIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMVQIGIGLGI 295
            +  +  ++      G  ++  +  V    W +V  + +  L   LN      I   L I
Sbjct: 233 LLNRQGFAMATSDAAGDTQLFASTYVEKAGWYVVAQVPEHELYASLNAGSRQIIIWALVI 292

Query: 296 LLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLADKFNKFVD 355
               AL+  W        L ++A+    +  G GDL  R+ +  Q E+  L + FN F+D
Sbjct: 293 AGAFALIGIWLAGTLTKPLESLADVFQQLGRGQGDLRSRIPMPEQKEIARLVEGFNNFID 352

Query: 356 RLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMASATAEIAS 415
            LH  +  V + S AL   A   A  + Q     ++Q+D+    A A+TEM S   E+A 
Sbjct: 353 HLHGTISQVAKTSHALKASAQDVAKQSHQTENSTKSQRDQTLQAAAALTEMGSTVNEVAQ 412

Query: 416 NAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHANEISTILST 475
           +A + A+NA  +      G    Q++  +I+ L+ ++    R+I  L+ H   I  IL T
Sbjct: 413 SATHAAQNANMATTNSAHGREITQRAVHAINGLSGQIQDVSRVIQSLDEHTAAIGGILDT 472

Query: 476 IRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQTKIAGLQKV 535
           IRGI+EQTNLLALNAAIEAARAG+ GRGF+VVADEVR L+QR   +T+EIQ KI   Q+ 
Sbjct: 473 IRGISEQTNLLALNAAIEAARAGDHGRGFSVVADEVRTLAQRAAQATDEIQVKIDKFQQD 532

Query: 536 TTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEEQSLVTADI 595
           + +AVS M  S       V   N+    LQ I+E I  I+D+ TQ+A+A EEQ+ V  DI
Sbjct: 533 SKSAVSQMESSRARTTDVVTATNEIDKLLQDIAEEIAHINDVNTQVATATEEQATVVEDI 592

Query: 596 NVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639
           + N   +   S++     +  V  +  L  +AQEL+ E+SRFKL
Sbjct: 593 SRNINDISASSEETLNATKILVSVSDKLDELAQELSSEVSRFKL 636