Pairwise Alignments

Query, 298 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  103 bits (258), Expect = 3e-27
 Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 30/241 (12%)

Query: 52  LIFTPRADGSLPYFLQGLGATLRLSLWGMVLALVLGSLIGIAR-SQKAWFVRLPANAFVQ 110
           L F+P   G  P  L+G   T+ ++   + L  VLG L+GI R + K  ++     A+V 
Sbjct: 3   LDFSPVWQG-WPDLLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYVA 61

Query: 111 LVRNIPPLVFVFIFYFFISNQLIPLLGLDELLRYHTAEVHPLITWLFGPARLWENLLSGV 170
            +R  P LV +FI +F +     P  G+                       L    L GV
Sbjct: 62  AIRGTPLLVQLFILFFGL-----PHFGI-----------------------LLPAFLCGV 93

Query: 171 LCIGLLSSAYIAEIVRAGLANIPQGQWEAADSLGLPTWGKYRYVIAPQVLTAITPALAGQ 230
           L +G+ S AY++EIVR  + +I +GQ  AA SLG+      R ++ PQ +  + P L  +
Sbjct: 94  LGLGVYSGAYVSEIVRGAIQSIDKGQTMAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNE 153

Query: 231 TISLIKDTSIISLISIQELTFVGSEIANSSGLIFEIWLIVGAAYLVLCLTLSMLFKQVEK 290
            I+LIK+++++SL++I ++   G +I + S    E++L +   Y VL  T++++ +  E+
Sbjct: 154 FIALIKNSALVSLLTIHDVMHEGQKIISVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQ 213

Query: 291 R 291
           +
Sbjct: 214 K 214